>YL33_SCHPO (Q9UTR0) Hypothetical protein C1071.03c in chromosome I|
          Length = 338

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -2

Query: 279 RKKRKKMLYRLFFQDAF----LSRHVCSLFRLVV*LDVSSRTALFDR 151
           +KKR   +YR+FF   F    L   +C LF  V  +   S  +L+DR
Sbjct: 10  KKKRNTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSDSSVSLYDR 56

>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3|
          Length = 398

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 86  NGGMSHGYYATKNLSQLNAGPDRSKSAVLLETSSQTTRRKREQTWRERKASWKNR 250
           N G++ G   T+N ++  A P     A   + +  T +++REQ W E+K   + R
Sbjct: 310 NQGLNEG--RTEN-NKAQASPSEENKANKNQLAKVTNKQRREQQWMEKKKRQEER 361

>ACH1_MANSE (P91766) Acetylcholine receptor protein, alpha-like subunit|
           precursor (MARA1)
          Length = 516

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 167 VLLETSSQTTRRKREQTWRERKASWKNRRYNIFFLFFLPS 286
           V L+    TT    EQ+W + K SW+ R Y    +  +PS
Sbjct: 64  VNLKNQIMTTNLWVEQSWYDYKLSWEPREYGGVEMLHVPS 103

>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid|
            antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia
            musculorum protein) (Dystonin) (Fragment)
          Length = 3060

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 38   IAGLLE*QEPKKCYDKNGGMSHGYYATKNLSQLNAGPDRSKSAVLLETSSQTT 196
            I+GL+   E +KC+D     SHG    + L QL    + SK+  ++  +S TT
Sbjct: 1267 ISGLIS-PELRKCFDLKDAKSHGLIDEQILCQLK---ELSKAKEIISAASPTT 1315

>ZDH13_PONPY (Q5NVB9) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 13) (DHHC-13)
          Length = 622

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 182 SSQTTRRKREQTWRERKASWKNRRYNIFFLFFLPSLIG 295
           +S   R  +   W  R   + N  Y IFFLFFL  + G
Sbjct: 446 NSCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCG 483

>ZDH13_MACFA (Q4R690) Probable palmitoyltransferase ZDHHC13 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 13) (DHHC-13)
          Length = 622

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 182 SSQTTRRKREQTWRERKASWKNRRYNIFFLFFLPSLIG 295
           +S   R  +   W  R   + N  Y IFFLFFL  + G
Sbjct: 446 NSCVARYDQHCLWTGRCIGFGNHHYYIFFLFFLSMVCG 483

>LUXQ_VIBPA (Q87GU5) Autoinducer 2 sensor kinase/phosphatase luxQ (EC 2.7.13.3)|
           (EC 3.1.3.-)
          Length = 858

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 178 DVESNNKAEKRTNMARKEGVLEKQAIQHFLSFLSTE 285
           D+ +  +AEK++N+AR+E     QA   FL+ +S E
Sbjct: 457 DITTLIEAEKQSNLARREAEKSAQARADFLAKMSHE 492


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,277,854
Number of Sequences: 219361
Number of extensions: 620876
Number of successful extensions: 1861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)