ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome... 121 1e-24
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
3dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 121 1e-24
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 109 5e-21
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 109 5e-21
7emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial se... 109 5e-21
8gb|BT016644.1| Zea mays clone Contig477 mRNA sequence 72 1e-09
9gb|BT016818.1| Zea mays clone Contig651 mRNA sequence 72 1e-09
10gb|AY107397.1| Zea mays PCO076624 mRNA sequence 72 1e-09
11gb|BT016902.1| Zea mays clone Contig735 mRNA sequence 66 6e-08
12gb|AY105862.1| Zea mays PCO076623 mRNA sequence 66 6e-08
13gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, co... 46 0.060
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.24
15gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genom... 44 0.24
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
17gb|AF270379.1|AF270379 Staphylococcus epidermidis strain SR1 clo... 42 0.94
18gb|AF270098.1|AF270098 Staphylococcus epidermidis strain SR1 clo... 42 0.94
19gb|AF269737.1|AF269737 Staphylococcus epidermidis strain SR1 clo... 42 0.94
20ref|NM_102680.2| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIK... 40 3.7
21ref|NM_179396.1| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIK... 40 3.7
22gb|AC123683.6| Mus musculus chromosome 9, clone RP23-296I6, comp... 40 3.7
23emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 40 3.7
24gb|AC123064.3| Mus musculus BAC clone RP23-220P13 from chromosom... 40 3.7
25gb|AC110823.5| Mus musculus BAC clone RP24-366C12 from chromosom... 40 3.7
26gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, comple... 40 3.7
27gb|AY070368.1| Arabidopsis thaliana putative RNA-binding protein... 40 3.7
28gb|AC152414.7| Mus musculus BAC clone RP23-358O14 from chromosom... 40 3.7
29emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chro... 40 3.7
30emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 i... 40 3.7
31dbj|AK134256.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 40 3.7
32gb|AY062613.1| Arabidopsis thaliana RNA-binding protein MEI2, pu... 40 3.7
33dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-1977... 40 3.7
34dbj|AK034986.1| Mus musculus 12 days embryo embryonic body betwe... 40 3.7
35gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15... 40 3.7
36emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on ch... 40 3.7
37gb|AC138719.4| Mus musculus BAC clone RP23-178O8 from 10, comple... 40 3.7
38gb|AC150312.2| Mus musculus BAC clone RP23-336M16 from 7, comple... 40 3.7
39gb|AC148975.3| Mus musculus BAC clone RP23-398E10 from 7, comple... 40 3.7 
>gb|AC114011.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078f20, complete sequence
          Length = 151042

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                         
Query: 190   gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 249
             |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 87657 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 87598

                              
Query: 250   ccaggtgctttgtcctc 266
             |||||||| ||||||||
Sbjct: 87597 ccaggtgccttgtcctc 87581
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 190      gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 249
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16347222 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16347163

                                 
Query: 250      ccaggtgctttgtcctc 266
                |||||||| ||||||||
Sbjct: 16347162 ccaggtgccttgtcctc 16347146
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>dbj|AK058672.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H04, full
            insert sequence
          Length = 2175

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                        
Query: 190  gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 249
            |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 1731 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 1672

                             
Query: 250  ccaggtgctttgtcctc 266
            |||||||| ||||||||
Sbjct: 1671 ccaggtgccttgtcctc 1655
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  121 bits (61), Expect = 1e-24
 Identities = 73/77 (94%)
 Strand = Plus / Minus

                                                                            
Query: 190      gtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaaggcca 249
                |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 16437201 gtcatcttgctctggatttgcctgtgcacatgcacaaggaactccacataggaaaggcca 16437142

                                 
Query: 250      ccaggtgctttgtcctc 266
                |||||||| ||||||||
Sbjct: 16437141 ccaggtgccttgtcctc 16437125
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 5e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 186      tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13860418 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13860477

                                           
Query: 246      gccaccaggtgctttgtcctccaccaa 272
                |||||||||||| ||||| || |||||
Sbjct: 13860478 gccaccaggtgccttgtcttcgaccaa 13860504
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 5e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                            
Query: 186      tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
                ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 13814698 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 13814757

                                           
Query: 246      gccaccaggtgctttgtcctccaccaa 272
                |||||||||||| ||||| || |||||
Sbjct: 13814758 gccaccaggtgccttgtcttcgaccaa 13814784
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>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 50021

 Score =  109 bits (55), Expect = 5e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                         
Query: 186   tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
             ||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 29221 tcaggtcatcttgctttggatttgcctatgaacatgtacaaggaactctacataagaaag 29280

                                        
Query: 246   gccaccaggtgctttgtcctccaccaa 272
             |||||||||||| ||||| || |||||
Sbjct: 29281 gccaccaggtgccttgtcttcgaccaa 29307
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>gb|BT016644.1| Zea mays clone Contig477 mRNA sequence
          Length = 1961

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 186  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1302 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1243

                                    
Query: 246  gccaccaggtgctttgtcctccac 269
            | | ||||| || |||||||||||
Sbjct: 1242 gacgccaggcgccttgtcctccac 1219
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>gb|BT016818.1| Zea mays clone Contig651 mRNA sequence
          Length = 686

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                       
Query: 186 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
           ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 377 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 436

                                   
Query: 246 gccaccaggtgctttgtcctccac 269
           | | ||||| || |||||||||||
Sbjct: 437 gacgccaggcgccttgtcctccac 460
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>gb|AY107397.1| Zea mays PCO076624 mRNA sequence
          Length = 2256

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                        
Query: 186  tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
            ||||||||||||||| |||||||||||||| ||||| || |||||||| || ||||| | 
Sbjct: 1839 tcaggtcatcttgctttggatttgcctgtggacatgcacaaggaactcgacgtaggagaa 1780

                                    
Query: 246  gccaccaggtgctttgtcctccac 269
            | | ||||| || |||||||||||
Sbjct: 1779 gacgccaggcgccttgtcctccac 1756
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>gb|BT016902.1| Zea mays clone Contig735 mRNA sequence
          Length = 987

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                       
Query: 186 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 438 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 497

                                
Query: 246 gccaccaggtgctttgtcctc 266
           | | |||||||| ||||||||
Sbjct: 498 gacgccaggtgccttgtcctc 518
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>gb|AY105862.1| Zea mays PCO076623 mRNA sequence
          Length = 924

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 69/81 (85%)
 Strand = Plus / Minus

                                                                       
Query: 186 tcaggtcatcttgctctggatttgcctgtgaacatgtacgaggaactccacataggaaag 245
           ||||||||||||||| ||||| |||||||| ||||| ||||| |||||| | ||||| | 
Sbjct: 830 tcaggtcatcttgctttggatctgcctgtggacatgcacgagaaactcctcgtaggagaa 771

                                
Query: 246 gccaccaggtgctttgtcctc 266
           | | |||||||| ||||||||
Sbjct: 770 gacgccaggtgccttgtcctc 750
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>gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, complete sequence
          Length = 212404

 Score = 46.1 bits (23), Expect = 0.060
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1      gggataaaaatagcactgtaaat 23
              |||||||||||||||||||||||
Sbjct: 149287 gggataaaaatagcactgtaaat 149265
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                                  
Query: 69       gtaattaagtacgagtacaaactcttttcagaaa 102
                |||||||||||| |||||||||||||||| ||||
Sbjct: 16427078 gtaattaagtac-agtacaaactcttttctgaaa 16427046
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>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete
             sequence
          Length = 146775

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Plus

                                               
Query: 69    gtaattaagtacgagtacaaactcttttcagaaa 102
             |||||||||||| |||||||||||||||| ||||
Sbjct: 40132 gtaattaagtac-agtacaaactcttttctgaaa 40164
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                                  
Query: 69       gtaattaagtacgagtacaaactcttttcagaaa 102
                |||||||||||| |||||||||||||||| ||||
Sbjct: 16420711 gtaattaagtac-agtacaaactcttttctgaaa 16420679
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>gb|AF270379.1|AF270379 Staphylococcus epidermidis strain SR1 clone step.4033c10 genomic
          sequence
          Length = 1609

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 40 ctttatatgaaaatctcagta 60
          |||||||||||||||||||||
Sbjct: 16 ctttatatgaaaatctcagta 36
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>gb|AF270098.1|AF270098 Staphylococcus epidermidis strain SR1 clone step.1048g07 genomic
            sequence
          Length = 3379

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   ctttatatgaaaatctcagta 60
            |||||||||||||||||||||
Sbjct: 2988 ctttatatgaaaatctcagta 2968
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>gb|AF269737.1|AF269737 Staphylococcus epidermidis strain SR1 clone step.1020g09 genomic
           sequence
          Length = 2858

 Score = 42.1 bits (21), Expect = 0.94
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 40  ctttatatgaaaatctcagta 60
           |||||||||||||||||||||
Sbjct: 411 ctttatatgaaaatctcagta 431
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>ref|NM_102680.2| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA
           binding / nucleic acid binding AT1G29400 (AML5)
           transcript variant AT1G29400.1 mRNA, complete cds
          Length = 2880

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 aatctctaccaaccaaaata 169
           ||||||||||||||||||||
Sbjct: 34  aatctctaccaaccaaaata 15
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>ref|NM_179396.1| Arabidopsis thaliana AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA
           binding / nucleic acid binding AT1G29400 (AML5)
           transcript variant AT1G29400.2 mRNA, complete cds
          Length = 2921

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 aatctctaccaaccaaaata 169
           ||||||||||||||||||||
Sbjct: 78  aatctctaccaaccaaaata 59
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>gb|AC123683.6| Mus musculus chromosome 9, clone RP23-296I6, complete sequence
          Length = 189100

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    agtacaaacagggtaattaa 76
             ||||||||||||||||||||
Sbjct: 57663 agtacaaacagggtaattaa 57682
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>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
              complete sequence
          Length = 179357

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 178    atgaagcttcaggtcatcttgctc 201
              |||||||||||| |||||||||||
Sbjct: 135763 atgaagcttcagttcatcttgctc 135786
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>gb|AC123064.3| Mus musculus BAC clone RP23-220P13 from chromosome 10, complete
             sequence
          Length = 186172

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gggataaaaatagcactgta 20
             ||||||||||||||||||||
Sbjct: 62892 gggataaaaatagcactgta 62911
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>gb|AC110823.5| Mus musculus BAC clone RP24-366C12 from chromosome 7, complete sequence
          Length = 141116

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aaagaaaaacggtccattta 119
             ||||||||||||||||||||
Sbjct: 42222 aaagaaaaacggtccattta 42203
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>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence
          Length = 221903

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ccaaaatatcacaccaatga 181
              ||||||||||||||||||||
Sbjct: 103131 ccaaaatatcacaccaatga 103112
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>gb|AY070368.1| Arabidopsis thaliana putative RNA-binding protein MEI2 (At1g29400)
           mRNA, complete cds
          Length = 2927

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 aatctctaccaaccaaaata 169
           ||||||||||||||||||||
Sbjct: 73  aatctctaccaaccaaaata 54
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>gb|AC152414.7| Mus musculus BAC clone RP23-358O14 from chromosome 10, complete sequence
          Length = 230322

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gggataaaaatagcactgta 20
              ||||||||||||||||||||
Sbjct: 196976 gggataaaaatagcactgta 196995
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>emb|AL672177.9| Mouse DNA sequence from clone RP23-292D8 on chromosome 11 Contains the 3'
              end of the Gria1 gene for glutamate receptor, ionotropic,
              AMPA1 (alpha 1), complete sequence
          Length = 157692

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 36     gagtctttatatgaaaatctcagt 59
              ||||| ||||||||||||||||||
Sbjct: 130476 gagtcgttatatgaaaatctcagt 130453
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>emb|CR356236.12| Zebrafish DNA sequence from clone CH211-251P4 in linkage group 13,
             complete sequence
          Length = 171465

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    caaactcttttcagaaagaa 105
             ||||||||||||||||||||
Sbjct: 47074 caaactcttttcagaaagaa 47055
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>dbj|AK134256.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
           enriched library, clone:5930410P22
           product:unclassifiable, full insert sequence
          Length = 2085

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  agtacaaacagggtaattaa 76
           ||||||||||||||||||||
Sbjct: 488 agtacaaacagggtaattaa 507
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>gb|AY062613.1| Arabidopsis thaliana RNA-binding protein MEI2, putative (F15D2.30)
           mRNA, complete cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 aatctctaccaaccaaaata 169
           ||||||||||||||||||||
Sbjct: 73  aatctctaccaaccaaaata 54
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>dbj|AB179423.1| Macaca fascicularis testis cDNA clone: QtsA-19777, similar to human
            v-raf murine sarcoma viral oncogene homolog B1 (BRAF),
            mRNA, RefSeq: NM_004333.2
          Length = 2849

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  accaggtgctttgtcctcca 268
            ||||||||||||||||||||
Sbjct: 2314 accaggtgctttgtcctcca 2333
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>dbj|AK034986.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430070G17 product:unclassifiable, full insert
           sequence
          Length = 2255

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 93  ttttcagaaagaaaaacggtccat 116
           |||||||||||||||| |||||||
Sbjct: 396 ttttcagaaagaaaaatggtccat 419
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>gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete
             sequence
          Length = 130653

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   aatctctaccaaccaaaata 169
             ||||||||||||||||||||
Sbjct: 36872 aatctctaccaaccaaaata 36891
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>emb|AL928805.18| Mouse DNA sequence from clone RP23-291H20 on chromosome 2, complete
              sequence
          Length = 192688

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     gagtacaaactcttttcaga 100
              ||||||||||||||||||||
Sbjct: 141397 gagtacaaactcttttcaga 141416
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>gb|AC138719.4| Mus musculus BAC clone RP23-178O8 from 10, complete sequence
          Length = 183689

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 93     ttttcagaaagaaaaacggtccat 116
              |||||||||||||||| |||||||
Sbjct: 109345 ttttcagaaagaaaaatggtccat 109368
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>gb|AC150312.2| Mus musculus BAC clone RP23-336M16 from 7, complete sequence
          Length = 207429

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    aaagaaaaacggtccattta 119
              ||||||||||||||||||||
Sbjct: 197196 aaagaaaaacggtccattta 197215
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>gb|AC148975.3| Mus musculus BAC clone RP23-398E10 from 7, complete sequence
          Length = 209924

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   aaagaaaaacggtccattta 119
             ||||||||||||||||||||
Sbjct: 31014 aaagaaaaacggtccattta 31033


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,142,767
Number of Sequences: 3902068
Number of extensions: 3142767
Number of successful extensions: 70555
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 70428
Number of HSP's gapped (non-prelim): 130
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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