ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16c07 |
|---|---|
| Clone Library Name | barley_pub |
>NU155_RAT (P37199) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)| (155 kDa nucleoporin) (P140) Length = 1390 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +2 Query: 5 HQCAFNWIIFTSCKLHS*DHCISFSTHELLQFLFSSTNPKIQEEIEEAR 151 +Q W K++ +SF LLQF FS +P +Q EI+ +R Sbjct: 239 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPIVQIEIDNSR 287
>NU155_MOUSE (Q99P88) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)| (155 kDa nucleoporin) Length = 1391 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +2 Query: 5 HQCAFNWIIFTSCKLHS*DHCISFSTHELLQFLFSSTNPKIQEEIEEAR 151 +Q W K++ +SF LLQF FS +P +Q EI+ +R Sbjct: 240 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPIVQIEIDNSR 288
>TGAS_STRMB (P81453) Protein-glutamine gamma-glutamyltransferase precursor (EC| 2.3.2.13) (Transglutaminase) (TGase) (MTG) Length = 407 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 385 RAKEGETLEELRARTAAQFVDEQSGFQR 302 R + GET E R A + DE+ GFQR Sbjct: 174 RPRSGETRAEFEGRVAKESFDEEKGFQR 201
>SCOB_XANCP (O34263) Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B| (EC 2.8.3.5) (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B) Length = 213 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -2 Query: 397 LVIERAKEGETLEELRARTAAQFVDEQSG 311 LV+ A EG LEELRA+T FV + G Sbjct: 185 LVLVEAAEGVGLEELRAKTGVAFVVQTRG 213
>TRME_TREPA (O83561) Probable tRNA modification GTPase trmE| Length = 495 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -3 Query: 378 KRERRLKNCEQEPPLSLWTNRVVSSGCPRRGNRQVW 271 +R RRL+ C QE L R+V GCP G ++ Sbjct: 205 ERLRRLRACWQERALQRTGVRIVLGGCPNAGKSSLF 240
>CATA_MYCTU (Q08129) Peroxidase/catalase T (EC 1.11.1.6) (Catalase-peroxidase| T) Length = 740 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 9/41 (21%) Frame = -3 Query: 351 EQEPPLSLWTNRVVSSGCP---------RRGNRQVWWTKAL 256 EQ PP++ T S+GCP G Q WW L Sbjct: 3 EQHPPITETTTGAASNGCPVVGHMKYPVEGGGNQDWWPNRL 43
>CATA_MYCBO (P46817) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 740 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 9/41 (21%) Frame = -3 Query: 351 EQEPPLSLWTNRVVSSGCP---------RRGNRQVWWTKAL 256 EQ PP++ T S+GCP G Q WW L Sbjct: 3 EQHPPITETTTGAASNGCPVVGHMKYPVEGGGNQDWWPNRL 43
>K0317_MOUSE (Q8CHG5) Protein KIAA0317| Length = 823 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 49 AFLGSLYFIFHTRVAAVSFLQH*PKNTRGDR 141 AF ++ F+F VSFLQ+ + RGDR Sbjct: 14 AFFFTIKFLFELAARVVSFLQNEDRERRGDR 44
>K0317_HUMAN (O15033) Protein KIAA0317| Length = 823 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +1 Query: 49 AFLGSLYFIFHTRVAAVSFLQH*PKNTRGDR 141 AF ++ F+F VSFLQ+ + RGDR Sbjct: 14 AFFFTIKFLFELAARVVSFLQNEDRERRGDR 44
>ZN132_HUMAN (P52740) Zinc finger protein 132| Length = 589 Score = 28.1 bits (61), Expect = 5.2 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = -1 Query: 329 CGRTEWFPADVHEEETDKSGGR 264 CGR W A++H+ + + SGG+ Sbjct: 30 CGRDFWLNANLHQHQKEHSGGK 51
>CLPB_CAMJE (Q9PI02) Chaperone clpB| Length = 857 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = -2 Query: 388 ERAKEGETLEELRARTAAQFVDEQSGFQRMSTKRKQTSLV-DEGSVKFSR 242 E AKE L+E + +QF +E+S F +S K+K+ L+ +E S+ +R Sbjct: 443 EIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKAR 492
>NU155_HUMAN (O75694) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)| (155 kDa nucleoporin) Length = 1391 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = +2 Query: 5 HQCAFNWIIFTSCKLHS*DHCISFSTHELLQFLFSSTNPKIQEEIEEAR 151 +Q W K++ +SF LLQF FS +P +Q I+ +R Sbjct: 240 YQAEAGWFSQRCRKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDNSR 288
>DAM1_CANGA (Q6FLB2) DASH complex subunit DAM1 (Outer kinetochore protein DAM1)| Length = 307 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 9/61 (14%) Frame = -2 Query: 397 LVIERAKEGETLEELRARTAAQFVDEQ----SG-----FQRMSTKRKQTSLVDEGSVKFS 245 L E++K L LR + AQ DE+ SG FQ+ + +R + +L DE KF+ Sbjct: 125 LSAEKSKLKSRLNSLREKPNAQTSDEKMKKPSGISQPIFQKPNVRRPRNALNDENLHKFN 184 Query: 244 R 242 R Sbjct: 185 R 185
>NADM_PYRKO (Q5JEF8) Nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1)| (NAD(+) pyrophosphorylase) (NAD(+) diphosphorylase) (NMN adenylyltransferase) Length = 188 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 385 RAKEGETLEELRARTAAQFVDEQSGFQRM 299 R EGE EEL R+ A+F+ E G +R+ Sbjct: 137 RMVEGEPWEELVPRSVAEFIREIKGVERI 165
>RGA6_SCHPO (O43027) Probable Rho-GTPase-activating protein 6| Length = 733 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = +3 Query: 192 KNLLPCILPPEHYHSTILENLTEPSSTRLVCF 287 K PC P + HST+LE PSS V F Sbjct: 132 KYFTPCGSPTKLIHSTLLEERDTPSSLEHVSF 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,461,648 Number of Sequences: 219361 Number of extensions: 1105992 Number of successful extensions: 2607 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2558 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2607 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
