ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473857.1| Oryza sativa (japonica cultivar-group), predic... 161 2e-36
2dbj|AK064469.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 2e-36
3emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 159 8e-36
4emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 159 8e-36
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 159 8e-36
6emb|BX927391.6| Zebrafish DNA sequence from clone CH211-213B8 in... 42 1.4
7gb|AC163387.2| Mus musculus chromosome 1, clone RP24-181G14, com... 42 1.4
8gb|AC117432.4| Homo sapiens 3 BAC RP11-80F7 (Roswell Park Cancer... 42 1.4
9emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 ... 42 1.4
10gb|AC106719.4| Homo sapiens 3p BAC RP11-12J13 (Roswell Park Canc... 42 1.4
11ref|NM_127224.3| Arabidopsis thaliana MYB7; DNA binding / transc... 40 5.4
12gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 5.4
13gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosom... 40 5.4
14gb|BT014005.1| Lycopersicon esculentum clone 133055F, mRNA sequence 40 5.4
15gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosom... 40 5.4
16gb|AY519573.1| Arabidopsis thaliana MYB transcription factor (At... 40 5.4
17emb|BX005133.4| Human DNA sequence from clone DASS-103C7 on chro... 40 5.4
18emb|AL732432.3| Human DNA sequence from clone XXbac-92J3 on chro... 40 5.4
19emb|AL662781.4| Human DNA sequence from clone XXbac-1H2 on chrom... 40 5.4
20emb|AL596106.4| Human DNA sequence from clone RP11-13B15 on chro... 40 5.4
21emb|AL162498.12| Human DNA sequence from clone RP11-315A9 on chr... 40 5.4
22gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park C... 40 5.4
23emb|X90385.1|ATY49GENE A.thaliana DNA for Y49 gene 40 5.4
24gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP... 40 5.4
25emb|CR759808.2| Human DNA sequence from clone DAMC-143C14 on chr... 40 5.4
26gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 ma... 40 5.4
27gb|AY072387.1| Arabidopsis thaliana putative MYB family transcri... 40 5.4
28gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complet... 40 5.4
29gb|AY070850.1| Drosophila melanogaster GM03205 full length cDNA 40 5.4
30gb|AF388963.1|AF388963 HIV-1 isolate 99ZA25ZA from South Africa ... 40 5.4
31emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cDNA Co... 40 5.4
32emb|BX927232.4| Human DNA sequence from clone DAMA-334F21 on chr... 40 5.4
33emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chro... 40 5.4
34gb|U73100.1|HIVU73100 HIV-1 isolate TW391 from Taiwan, long term... 40 5.4
35dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 5.4
36emb|AL096770.17|HSBA150A6 Human DNA sequence from clone RP11-150... 40 5.4
37dbj|AP004498.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.4
38gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-binding... 40 5.4
39emb|AL359402.3|CNS05TEX Human chromosome 14 DNA sequence BAC C-2... 40 5.4
40emb|AL133223.5|CNS01DU8 Human chromosome 14 DNA sequence BAC R-1... 40 5.4 
>ref|XM_473857.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2715

 Score =  161 bits (81), Expect = 2e-36
 Identities = 144/165 (87%)
 Strand = Plus / Minus

                                                                        
Query: 232  attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 291
            |||||||||||||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 2713 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 2654

                                                                        
Query: 292  tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 351
            || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 2653 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 2594

                                                         
Query: 352  gcagttcttcaagcgtctctccctcttttgctcgctcaatcacca 396
            | ||||||||||| |||||||| || || |||||||| |||||||
Sbjct: 2593 gtagttcttcaagagtctctccttccttagctcgctcgatcacca 2549
to top
>dbj|AK064469.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-H01, full
            insert sequence
          Length = 1813

 Score =  161 bits (81), Expect = 2e-36
 Identities = 144/165 (87%)
 Strand = Plus / Minus

                                                                        
Query: 232  attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 291
            |||||||||||||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 1610 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 1551

                                                                        
Query: 292  tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 351
            || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 1550 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 1491

                                                         
Query: 352  gcagttcttcaagcgtctctccctcttttgctcgctcaatcacca 396
            | ||||||||||| |||||||| || || |||||||| |||||||
Sbjct: 1490 gtagttcttcaagagtctctccttccttagctcgctcgatcacca 1446
to top
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score =  159 bits (80), Expect = 8e-36
 Identities = 143/164 (87%)
 Strand = Plus / Plus

                                                                         
Query: 232   attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 291
             |||||||||||||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 23711 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 23770

                                                                         
Query: 292   tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 351
             || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 23771 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 23830

                                                         
Query: 352   gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 395
             | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 23831 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 23874
to top
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
              complete sequence
          Length = 150551

 Score =  159 bits (80), Expect = 8e-36
 Identities = 143/164 (87%)
 Strand = Plus / Plus

                                                                          
Query: 232    attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 291
              |||||||||||||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 139004 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 139063

                                                                          
Query: 292    tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 351
              || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 139064 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 139123

                                                          
Query: 352    gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 395
              | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 139124 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 139167
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  159 bits (80), Expect = 8e-36
 Identities = 143/164 (87%)
 Strand = Plus / Plus

                                                                            
Query: 232      attctactatccttgaaaacttaacagagccttcgtccaccagacttgtctgtttcctct 291
                |||||||||||||||||||||||||||||||||||||||| || || || || || ||||
Sbjct: 31041631 attctactatccttgaaaacttaacagagccttcgtccacaaggctggtttgctttctct 31041690

                                                                            
Query: 292      tcgtggacatccgctggaaaccactctgttcgtccacaaactgagcggcggttcttgctc 351
                || |||| | || |||||||||||||||||| || ||||||||||| ||||| || ||||
Sbjct: 31041691 tcttggatagcctctggaaaccactctgttcatcaacaaactgagcagcggtcctcgctc 31041750

                                                            
Query: 352      gcagttcttcaagcgtctctccctcttttgctcgctcaatcacc 395
                | ||||||||||| |||||||| || || |||||||| ||||||
Sbjct: 31041751 gtagttcttcaagagtctctccttccttagctcgctcgatcacc 31041794
to top
>emb|BX927391.6| Zebrafish DNA sequence from clone CH211-213B8 in linkage group 1,
              complete sequence
          Length = 146449

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 196    atttgttgccttgtattttac 216
              |||||||||||||||||||||
Sbjct: 138860 atttgttgccttgtattttac 138840
to top
>gb|AC163387.2| Mus musculus chromosome 1, clone RP24-181G14, complete sequence
          Length = 194188

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     atcactgtatttcattttcca 80
              |||||||||||||||||||||
Sbjct: 123495 atcactgtatttcattttcca 123475
to top
>gb|AC117432.4| Homo sapiens 3 BAC RP11-80F7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152631

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   tctactatccttgaaaactta 254
             |||||||||||||||||||||
Sbjct: 11235 tctactatccttgaaaactta 11255
to top
>emb|AL935166.14| Zebrafish DNA sequence from clone CH211-199C19 in linkage group 1,
             complete sequence
          Length = 121976

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   atttgttgccttgtattttac 216
             |||||||||||||||||||||
Sbjct: 87022 atttgttgccttgtattttac 87042
to top
>gb|AC106719.4| Homo sapiens 3p BAC RP11-12J13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154652

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   tctactatccttgaaaactta 254
             |||||||||||||||||||||
Sbjct: 43838 tctactatccttgaaaactta 43818
to top
>ref|NM_127224.3| Arabidopsis thaliana MYB7; DNA binding / transcription factor
           AT2G16720 (MYB7) mRNA, complete cds
          Length = 901

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 ccagacttgtctgtttcctc 290
           ||||||||||||||||||||
Sbjct: 493 ccagacttgtctgtttcctc 474
to top
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     tggacatccgctggaaacca 314
               ||||||||||||||||||||
Sbjct: 3081863 tggacatccgctggaaacca 3081882
to top
>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence
          Length = 200592

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     gttgctgcagtttcttttct 107
              ||||||||||||||||||||
Sbjct: 176518 gttgctgcagtttcttttct 176537
to top
>gb|BT014005.1| Lycopersicon esculentum clone 133055F, mRNA sequence
          Length = 1488

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 aagaggagatagaagaggct 148
           ||||||||||||||||||||
Sbjct: 872 aagaggagatagaagaggct 891
to top
>gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosome 7, complete sequence
          Length = 232468

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     gttgctgcagtttcttttct 107
              ||||||||||||||||||||
Sbjct: 166618 gttgctgcagtttcttttct 166599
to top
>gb|AY519573.1| Arabidopsis thaliana MYB transcription factor (At2g16720) mRNA,
           complete cds
          Length = 810

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 ccagacttgtctgtttcctc 290
           ||||||||||||||||||||
Sbjct: 482 ccagacttgtctgtttcctc 463
to top
>emb|BX005133.4| Human DNA sequence from clone DASS-103C7 on chromosome 6, complete
             sequence
          Length = 96209

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    cacacgagttgctgcagtttcttt 104
             ||||||||||| ||||||||||||
Sbjct: 39748 cacacgagttgatgcagtttcttt 39771
to top
>emb|AL732432.3| Human DNA sequence from clone XXbac-92J3 on chromosome 6 contains the
            OR5V1 and OR12D3 genes for olfactory receptor, family 5,
            subfamily V, member 1 and family 12, subfamily D, member
            3, complete sequence
          Length = 52664

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 81   cacacgagttgctgcagtttcttt 104
            ||||||||||| ||||||||||||
Sbjct: 9970 cacacgagttgatgcagtttcttt 9993
to top
>emb|AL662781.4| Human DNA sequence from clone XXbac-1H2 on chromosome 6 contains the
             OR5U1, OR5V1 and OR12D3 genes for olfactory receptor,
             family 5, subfamily U, member1, subfamily V, member 1 and
             family 12, subfamily D, member 3, the OR2B4P pseudogene
             for olfactory receptor, family 2, subfamily B, member 4
             and a DEAD/H box polypeptide 6 (DDX6) pseudogene, complete
             sequence
          Length = 106642

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    cacacgagttgctgcagtttcttt 104
             ||||||||||| ||||||||||||
Sbjct: 67143 cacacgagttgatgcagtttcttt 67166
to top
>emb|AL596106.4| Human DNA sequence from clone RP11-13B15 on chromosome 13, complete
             sequence
          Length = 116621

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tccagcactaacccaaaaat 126
             ||||||||||||||||||||
Sbjct: 62500 tccagcactaacccaaaaat 62481
to top
>emb|AL162498.12| Human DNA sequence from clone RP11-315A9 on chromosome 13 Contains a
            CpG island, complete sequence
          Length = 24565

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 275  acttgtctgtttcctcttcgtggacatc 302
            |||||| |||||||||||| ||||||||
Sbjct: 8458 acttgtttgtttcctcttcctggacatc 8485
to top
>gb|AC087237.14| Homo sapiens 12p BAC RP11-405A12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166380

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    cacacgagttgctgcagtttcttt 104
             ||||||||||| ||||||||||||
Sbjct: 27473 cacacgagttgatgcagtttcttt 27496
to top
>emb|X90385.1|ATY49GENE A.thaliana DNA for Y49 gene
          Length = 2471

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  ccagacttgtctgtttcctc 290
            ||||||||||||||||||||
Sbjct: 1245 ccagacttgtctgtttcctc 1226
to top
>gb|AC091606.8| Mus Musculus Strain C57BL6/J chromosome X BAC, RP23-75P20, complete
             sequence
          Length = 234105

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    gcagtttcttttctccagca 113
             ||||||||||||||||||||
Sbjct: 59853 gcagtttcttttctccagca 59834
to top
>emb|CR759808.2| Human DNA sequence from clone DAMC-143C14 on chromosome 6, complete
             sequence
          Length = 104964

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    cacacgagttgctgcagtttcttt 104
             ||||||||||| ||||||||||||
Sbjct: 53022 cacacgagttgatgcagtttcttt 53045
to top
>gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete
             sequence
          Length = 112792

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   ccagacttgtctgtttcctc 290
             ||||||||||||||||||||
Sbjct: 60384 ccagacttgtctgtttcctc 60403
to top
>gb|AY072387.1| Arabidopsis thaliana putative MYB family transcription factor
           (At2g16720) mRNA, complete cds
          Length = 573

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 ccagacttgtctgtttcctc 290
           ||||||||||||||||||||
Sbjct: 198 ccagacttgtctgtttcctc 179
to top
>gb|AC053544.5| Homo sapiens BAC clone RP11-793B9 from 4, complete sequence
          Length = 187332

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 81     cacacgagttgctgcagtttcttt 104
              ||||||||||| ||||||||||||
Sbjct: 121717 cacacgagttgatgcagtttcttt 121740
to top
>gb|AY070850.1| Drosophila melanogaster GM03205 full length cDNA
          Length = 3228

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 366  gtctctccctcttttgctcg 385
            ||||||||||||||||||||
Sbjct: 2942 gtctctccctcttttgctcg 2923
to top
>gb|AF388963.1|AF388963 HIV-1 isolate 99ZA25ZA from South Africa 5' long terminal repeat,
           partial sequence
          Length = 307

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 caagaggagatagaagaggc 147
           ||||||||||||||||||||
Sbjct: 35  caagaggagatagaagaggc 54
to top
>emb|BX821980.1|CNS0AA2S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL89ZH12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 956

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 ccagacttgtctgtttcctc 290
           ||||||||||||||||||||
Sbjct: 485 ccagacttgtctgtttcctc 466
to top
>emb|BX927232.4| Human DNA sequence from clone DAMA-334F21 on chromosome 6, complete
             sequence
          Length = 99722

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    cacacgagttgctgcagtttcttt 104
             ||||||||||| ||||||||||||
Sbjct: 50861 cacacgagttgatgcagtttcttt 50884
to top
>emb|AL732294.18| Mouse DNA sequence from clone RP23-59N7 on chromosome X, complete
             sequence
          Length = 112893

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    gcagtttcttttctccagca 113
             ||||||||||||||||||||
Sbjct: 65756 gcagtttcttttctccagca 65737
to top
>gb|U73100.1|HIVU73100 HIV-1 isolate TW391 from Taiwan, long terminal repeat, complete
           sequence
          Length = 649

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 128 caagaggagatagaagaggc 147
           ||||||||||||||||||||
Sbjct: 44  caagaggagatagaagaggc 63
to top
>dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2258N2, complete
              sequences
          Length = 174548

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     caactggatcattttcactt 38
              ||||||||||||||||||||
Sbjct: 151915 caactggatcattttcactt 151934
to top
>emb|AL096770.17|HSBA150A6 Human DNA sequence from clone RP11-150A6 on chromosome 6 Contains genes
             OR5U1, OR5V1 and OR12D3 for olfactory receptors 5U1, 5V1
             and 12D3, the 3' end of olfactory receptor 2B4 pseudogene
             OR2B4P, a DDX6 (DEAD/H (Asp-Glu-Ala-Asp/His) box
             polypeptide 6 (RNA helicase, 54kD)) pseudogene, STSs and
             GSSs, complete sequence
          Length = 97392

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    cacacgagttgctgcagtttcttt 104
             ||||||||||| ||||||||||||
Sbjct: 61819 cacacgagttgatgcagtttcttt 61842
to top
>dbj|AP004498.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT06A20, TM0030,
            complete sequence
          Length = 82599

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   cttcttgtaaactgcattct 55
            ||||||||||||||||||||
Sbjct: 1582 cttcttgtaaactgcattct 1601
to top
>gb|U26937.1|ATU26937 Arabidopsis thaliana clone myb7 DNA-binding protein mRNA, complete
           cds
          Length = 844

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 ccagacttgtctgtttcctc 290
           ||||||||||||||||||||
Sbjct: 493 ccagacttgtctgtttcctc 474
to top
>emb|AL359402.3|CNS05TEX Human chromosome 14 DNA sequence BAC C-2273N11 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 119296

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   aaatttgttgccttgtattt 213
             ||||||||||||||||||||
Sbjct: 31626 aaatttgttgccttgtattt 31645
to top
>emb|AL133223.5|CNS01DU8 Human chromosome 14 DNA sequence BAC R-114H15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 140292

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   aaatttgttgccttgtattt 213
             ||||||||||||||||||||
Sbjct: 31023 aaatttgttgccttgtattt 31004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,295,698
Number of Sequences: 3902068
Number of extensions: 4295698
Number of successful extensions: 85277
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85192
Number of HSP's gapped (non-prelim): 85
length of query: 401
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 379
effective length of database: 17,147,199,772
effective search space: 6498788713588
effective search space used: 6498788713588
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top