ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase E... 30 1.9
2Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163 30 1.9
3CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) ... 30 1.9
4TBCE_XENLA (Q5U508) Tubulin-specific chaperone E (Tubulin-foldin... 28 5.4
5PCDBF_HUMAN (Q9Y5E8) Protocadherin beta 15 precursor (PCDH-beta15) 28 5.4
6LAR_CAEEL (Q9BMN8) Tyrosine-protein phosphatase Lar-like precurs... 28 5.4
7Y676_MYCPN (P75116) Hypothetical protein MPN676 (K05_orf106) 28 5.4
8GLB_NASMU (P31331) Globin (Myoglobin) 28 5.4
9DHB1_RAT (P51657) Estradiol 17-beta-dehydrogenase 1 (EC 1.1.1.62... 28 7.1
10PCDBF_PANTR (Q5DRD3) Protocadherin beta 15 precursor (PCDH-beta15) 28 7.1
11SYFB_NOVAD (Q2GAI7) Phenylalanyl-tRNA synthetase beta chain (EC ... 28 7.1
12ARSS_CENAS (Q8GGJ7) Arsenite oxidase small subunit precursor (EC... 27 9.3

>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 200 SCLRNFHCPACIFSVASPPITSSMRSL-KMDLSMSKIMPCSSP 325
           S L+NF  P+C F+   P   S ++ L K+DLS +  + CS P
Sbjct: 210 SLLKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNP-LKCSIP 251



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>Y163_SYNY3 (Q55563) Hypothetical WD-repeat protein sll0163|
          Length = 1693

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 124  LHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSLHLLCSLATYNLVNEVPENGPLNV 300
            L  L+A +  G D Q+  +  T   Q P+  P  SLH +  LA  N  N     GP+ V
Sbjct: 959  LEALLAAVKTGQDLQKLVTPETPLVQYPSLAPWLSLHSI--LARINECNRCHHEGPVTV 1015



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>CAD13_CHICK (P33150) Cadherin-13 precursor (Truncated-cadherin) (T-cadherin)|
           (T-cad)
          Length = 712

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 167 NSHIQFILLKDSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSK--IMPCSSPSGL 334
           N+H Q +LL++    N++ P  +     PP+T++   LK+ +   K   M CS+   L
Sbjct: 639 NTHAQVVLLQNLKKANYNIPISVTDSGKPPLTNN-TELKLQVCSCKKSRMDCSASDAL 695



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>TBCE_XENLA (Q5U508) Tubulin-specific chaperone E (Tubulin-folding cofactor E)|
          Length = 522

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 257 ITSSMRSL-KMDLSMSKIMPCSSPSGLPQSFISYNASSDN 373
           I+S + +L  +DLS +K+ P S+PS L  SF +    S N
Sbjct: 169 ISSQLENLTSLDLSENKLNPSSNPSSLATSFCNLKVLSLN 208



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>PCDBF_HUMAN (Q9Y5E8) Protocadherin beta 15 precursor (PCDH-beta15)|
          Length = 787

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = +1

Query: 58  PEFQE*LYFFYIIQSSEKKYKGLHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSL 231
           PEF + LY   + ++S      + +    +  G + + SYS+Y + +++   F LSSL
Sbjct: 240 PEFVQALYEVQVPENSPVGSLVVKVSARDLDTGTNGEISYSLYYSSQEIDKPFELSSL 297



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>LAR_CAEEL (Q9BMN8) Tyrosine-protein phosphatase Lar-like precursor (EC|
           3.1.3.48) (Protein-tyrosine phosphate 3)
          Length = 2200

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 245 ASPPITSSMRSLKMDLSMSKIMPCSSPSGLPQSFISY 355
           A+ P++   RSL  D  + K  PC  P+GL   +  Y
Sbjct: 437 ATAPVSPQARSLNRDSILVKWGPCEQPNGLITGYKVY 473



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>Y676_MYCPN (P75116) Hypothetical protein MPN676 (K05_orf106)|
          Length = 106

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 85  FYIIQSSEKKYKGLHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSLHLLCSLAT 255
           +Y+      +++   ++ +K+P+GN  Q  ++  T+   L   + LS  HLL  + T
Sbjct: 46  YYVFGFFTFRWQRSLIITSKVPSGNGIQFDFNSRTSHWLLNFLYSLSEYHLLFKVKT 102



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>GLB_NASMU (P31331) Globin (Myoglobin)|
          Length = 147

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 291 RSIFRDLIDEVIGGEATEKMQA 226
           RSIF + +D+  GG+ATE M++
Sbjct: 112 RSIFGEFLDKATGGKATESMKS 133



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>DHB1_RAT (P51657) Estradiol 17-beta-dehydrogenase 1 (EC 1.1.1.62)|
           (17-beta-HSD 1) (17-beta-hydroxysteroid dehydrogenase 1)
          Length = 344

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 121 GLHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPL 222
           GLHL V      +D  QS+ VY T R L +Q PL
Sbjct: 16  GLHLAVRL---ASDRSQSFKVYATLRDLKSQGPL 46



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>PCDBF_PANTR (Q5DRD3) Protocadherin beta 15 precursor (PCDH-beta15)|
          Length = 787

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 58  PEFQE*LYFFYIIQSSEKKYKGLHLLVAKIPNGNDYQQSYSVYTTERQLPTQFPLSSL 231
           PEF + LY   + ++S      + +    +  G + + SYS+Y +  ++   F LSSL
Sbjct: 240 PEFAQALYEVQVPENSPVGSLVVKVSARDLDTGTNGEISYSLYYSSEEINKPFELSSL 297



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>SYFB_NOVAD (Q2GAI7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 796

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 303 LDIERSIFRDLIDEVIGGEATEKMQAGQWKLRRQ 202
           LD    +   LI E+ GGEA+E ++AG+  L R+
Sbjct: 368 LDTGLDLLTSLILEICGGEASEVVRAGEPPLARK 401



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>ARSS_CENAS (Q8GGJ7) Arsenite oxidase small subunit precursor (EC 1.20.98.1)|
          Length = 173

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 158 TIINSHIQFILLKDSCLRNFHCPACIFSVASPPITSSMRSLKMDLSMSKIMPCSSPSGLP 337
           +I+ +H+   +  D+  + F CP C FSV  P             +  +++   +   LP
Sbjct: 97  SILCTHMGCPVSYDASAKTFKCP-CHFSVFDPD------------NHGQMVCGQATENLP 143

Query: 338 QSFISYNASSD 370
           Q  +SYNA++D
Sbjct: 144 QIQLSYNAAND 154


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,677,326
Number of Sequences: 219361
Number of extensions: 916418
Number of successful extensions: 2556
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2556
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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