ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16c03 |
|---|---|
| Clone Library Name | barley_pub |
>KI18A_HUMAN (Q8NI77) Kinesin family member 18A| Length = 898 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +1 Query: 214 TIAHLAAVQHVHCRPSSTNTYHLKVIICHRHRRHFLPDPVQLQH 345 T L VQ + C SS T +K+ R RR +P P++ QH Sbjct: 637 TFPQLGPVQPIPCCSSSGGTNLVKIPTEKRTRRKLMPSPLKGQH 680
>KI18A_MOUSE (Q91WD7) Kinesin family member 18A| Length = 886 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 214 TIAHLAAVQHVHCRPSSTNTYHLKVIICHRHRRHFLPDPVQLQH 345 T L +Q + C S ++ LK+ R RR +P P+++QH Sbjct: 637 TFPQLEPIQSISCCTSVSDPNVLKLTPQRRTRRKIIPSPLKVQH 680
>ACOT4_HUMAN (Q8N9L9) Acyl-coenzyme A thioesterase 4 (EC 3.1.2.2) (Acyl-CoA| thioesterase 4) (Peroxisomal acyl coenzyme A thioester hydrolase Ib) (Peroxisomal long-chain acyl-coA thioesterase Ib) (PTE-Ib) (PTE-2b) Length = 421 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%) Frame = +1 Query: 289 IICH-RHRRHFLPDPVQLQHERLAFGAVPADLPPDPG 396 ++C +H RHFLP V+ Q R LPP PG Sbjct: 119 LLCQAQHERHFLPPGVRRQSVRAGRVRATLFLPPGPG 155
>ZNF76_HUMAN (P36508) Zinc finger protein 76| Length = 570 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 136 KKPYQCCILHCGQ*MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNT 273 +KPY C + CG+ Y+S + V H HC+P + +T Sbjct: 312 EKPYVCTVPGCGKRFTEYSS--------LYKHHVVHTHCKPYTCST 349
>GP1D_CHLTR (P10555) Probable plasmid replicative DNA helicase (EC 3.6.1.-)| (dnaB-like protein) (Virulence plasmid protein pGP1-D) (Protein P-3) Length = 451 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/39 (48%), Positives = 23/39 (58%) Frame = -3 Query: 259 LGDSGHVEQQQDVLLFWPGRRRKCSSSFIVHNVECSIGK 143 L DSG +EQ DV+LF RK SSS N E ++GK Sbjct: 393 LRDSGQIEQDADVILF---INRKESSS----NCEITVGK 424
>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = +1 Query: 178 MKSYTSSSFRARTIAHLAAVQHVHCRPSSTNTYHLK 285 + Y SS R+ + AH +Q V +ST TYHL+ Sbjct: 132 INQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLR 167
>ZN143_HUMAN (P52747) Zinc finger protein 143 (SPH-binding factor)| Length = 626 Score = 28.5 bits (62), Expect = 4.0 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Frame = +1 Query: 58 YRTDLVVGSRHSSLK*Y*QSF*VTQAKKPYQCCILHCGQ*MKSYTSSSFRARTIAHLAAV 237 Y T+ G +S Y + +KPY C + C + Y+S + V Sbjct: 346 YCTEPGCGRAFASATNYKNHVRIHTGEKPYVCTVPGCDKRFTEYSS--------LYKHHV 397 Query: 238 QHVHCRPSSTN----TY-HLKVIICHRHRRHFLPDPVQLQHE 348 H H +P + N TY + + H+ H +P++ + E Sbjct: 398 VHTHSKPYNCNHCGKTYKQISTLAMHKRTAHNDTEPIEEEQE 439
>DHMH_PARDE (P29894) Methylamine dehydrogenase heavy chain precursor (EC| 1.4.99.3) (MADH) Length = 417 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Frame = -2 Query: 314 WRR*RWQMITF-----RWYVLVELGRQWTC*TAARCAIVLARKEEE 192 WR WQ + + R Y+LV+ +W TA+R +VL K E Sbjct: 308 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGE 353
>SEF1_YEAST (P34228) Suppressor protein SEF1| Length = 1057 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -3 Query: 274 TCWLSLGDSGHVEQQQDVLLFWPGRRRK----CSSSFI 173 TCW+ S H+ Q +L WP +K CS F+ Sbjct: 413 TCWIRTPRSTHISQALLILCIWPLPNQKVLDDCSYRFV 450
>ACOT2_HUMAN (P49753) Acyl-coenzyme A thioesterase 2 (EC 3.1.2.2) (Acyl-CoA| thioesterase 2) (Peroxisomal acyl-coenzyme A thioester hydrolase 2a) (Peroxisomal long-chain acyl-coA thioesterase 2) (ZAP128) (CTE-Ia) Length = 483 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +1 Query: 289 IICH-RHRRHFLPDPVQLQHERLAFGAVPADLPPDPG 396 ++C RH R+FLP V+ + R+ LPP+PG Sbjct: 181 LLCQTRHERYFLPPGVRREPVRVGRVRGTLFLPPEPG 217
>CP52P_CANTR (P30612) Cytochrome P450 52C1 (EC 1.14.14.-) (CYPLIIC1)| (Alkane-inducible P450-ALK7) Length = 505 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 28 QCMNHEYTLDYRTDLVVGSRHSSLK 102 Q + H +T+DY TD ++G SLK Sbjct: 179 QTLAHLFTIDYSTDFLLGESCDSLK 203
>PEPT_BACAN (Q81WU4) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 410 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Frame = +3 Query: 108 LTVILSYTGKETLPMLHSTL----WTMNEELHFLLLPGQ 212 L +TGK P +H T+NEEL+ +L P Q Sbjct: 80 LDTATDFTGKNVKPQIHENFDGNAITLNEELNIVLTPEQ 118 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,726,708 Number of Sequences: 219361 Number of extensions: 1006412 Number of successful extensions: 2131 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2131 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
