ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPTCA_DROME (P13395) Spectrin alpha chain 28 5.4

>SPTCA_DROME (P13395) Spectrin alpha chain|
          Length = 2415

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 319 REESSKHEASMNQVKLLDTANTGT*LITECRVHHSPKQLKTATQILV 179
           + ++ +HE + N+ ++ D  N GT LI   + H++  Q+ T  Q +V
Sbjct: 616 KHQNFEHELNANKSRIEDITNVGTELIE--KQHYAADQINTRMQEIV 660


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,634,449
Number of Sequences: 219361
Number of extensions: 947654
Number of successful extensions: 1744
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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