ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16c01 |
|---|---|
| Clone Library Name | barley_pub |
>MA2B1_HUMAN (O00754) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) [Contains: Lysosomal alpha-mannosidase A peptide; Lysosomal alpha-mannosidase Length = 1010 Score = 63.2 bits (152), Expect = 3e-10 Identities = 43/114 (37%), Positives = 54/114 (47%), Gaps = 2/114 (1%) Frame = -2 Query: 433 LPDNVAIITLQNLDDGTTLLRLGHLFQAAEDPQYSVMAKV--ELKKLFGKRTIKELTETN 260 LP +V ++TL + LLRL H F ED ++ A V L+ LF TI L ET Sbjct: 895 LPPSVHLLTLASWGPEMVLLRLEHQFAVGEDSGRNLSAPVTLNLRDLFSTFTITRLQETT 954 Query: 259 LSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLVKL 98 L ANQ + A +LKW P P N + L PMEIRTFL + Sbjct: 955 LVANQLREAASRLKWTTNTGPTPHQTPYQLDPAN-----ITLEPMEIRTFLASV 1003
>MA2B1_MACFA (Q60HE9) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1012 Score = 62.8 bits (151), Expect = 4e-10 Identities = 43/114 (37%), Positives = 54/114 (47%), Gaps = 2/114 (1%) Frame = -2 Query: 433 LPDNVAIITLQNLDDGTTLLRLGHLFQAAEDPQYSVMAKV--ELKKLFGKRTIKELTETN 260 LP +V ++TL + LLRL H F ED ++ A V L+ LF TI L ET Sbjct: 897 LPPSVHLLTLASWGPEMLLLRLEHQFAVGEDSGRNLSAPVTLNLRDLFSTFTITRLQETT 956 Query: 259 LSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLVKL 98 L ANQ + A +LKW P P N + L PMEIRTFL + Sbjct: 957 LVANQLREAASRLKWTTNTGPTPHQTPYQLDPAN-----ITLEPMEIRTFLASV 1005
>MA2B1_FELCA (O46432) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1007 Score = 62.4 bits (150), Expect = 5e-10 Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 1/113 (0%) Frame = -2 Query: 433 LPDNVAIITLQNLDDGTTLLRLGHLFQAAEDP-QYSVMAKVELKKLFGKRTIKELTETNL 257 LP +V ++TL D T LLRL H F ED S ++L LF TI L ET L Sbjct: 894 LPPSVHLLTLARWDQKTLLLRLEHQFAVGEDSGNLSSPVTLDLTDLFSAFTITYLQETTL 953 Query: 256 SANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLVKL 98 ANQ +++ +LKW T ++ SP + L PMEIRTFL + Sbjct: 954 VANQLRASASRLKW-----TPNTGPTPLPSPSRLDPATITLQPMEIRTFLASV 1001
>MA2B1_CAVPO (Q8VHC8) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1007 Score = 61.6 bits (148), Expect = 9e-10 Identities = 42/114 (36%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Frame = -2 Query: 433 LPDNVAIITLQNLDDGTTLLRLGHLFQAAEDPQ--YSVMAKVELKKLFGKRTIKELTETN 260 LP +V ++TL T LLRL H F ED S+ ++L+ LF TI L ET Sbjct: 893 LPPSVRLLTLARWGPDTLLLRLEHQFALGEDSSRNLSLPVTLDLQDLFSTFTITRLQETT 952 Query: 259 LSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLVKL 98 L+ANQ +++ +LKW D S A P + + L PMEIRTF+ + Sbjct: 953 LAANQLRASASRLKWTTEIDPISRPAVPRLDPSS-----ITLQPMEIRTFVASV 1001
>MA2B1_BOVIN (Q29451) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) [Contains: Lysosomal alpha-mannosidase A peptide; Lysosomal alpha-mannosidase Length = 999 Score = 61.6 bits (148), Expect = 9e-10 Identities = 43/114 (37%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Frame = -2 Query: 433 LPDNVAIITLQNLDDGTTLLRLGHLFQAAEDPQYSVMAKV--ELKKLFGKRTIKELTETN 260 LP +V ++TL T LLRL H F ED ++ + V +L LF TI L ET Sbjct: 885 LPPSVRLLTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFSAFTITNLRETT 944 Query: 259 LSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLVKL 98 L+ANQ + +L+W DT + P PV+ + L PMEIRTFL + Sbjct: 945 LAANQLLAYASRLQWTT--DTGPTPHPSPSRPVS---ATITLQPMEIRTFLASV 993
>MA2B1_MOUSE (O09159) Lysosomal alpha-mannosidase precursor (EC 3.2.1.24)| (Mannosidase, alpha B) (Lysosomal acid alpha-mannosidase) (Laman) (Mannosidase alpha class 2B member 1) Length = 1013 Score = 57.4 bits (137), Expect = 2e-08 Identities = 43/114 (37%), Positives = 53/114 (46%), Gaps = 2/114 (1%) Frame = -2 Query: 433 LPDNVAIITLQNLDDGTTLLRLGHLFQAAEDPQYSVMAKVEL--KKLFGKRTIKELTETN 260 LP V ++TL LLRL H F ED ++ + V L + LF TI L ET Sbjct: 897 LPPQVHLLTLARWGPKMLLLRLEHQFALKEDSDRNLSSPVTLNVQNLFQTFTINYLQETT 956 Query: 259 LSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLVKL 98 L+ANQ S +LKW S P P + V L PMEIRTFL + Sbjct: 957 LAANQPLSRASRLKWMTNTGPTSFPEPSKLDPTS-----VTLKPMEIRTFLASV 1005
>MA2B2_MOUSE (O54782) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1018 Score = 46.2 bits (108), Expect = 4e-05 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = -2 Query: 379 LLRLGHLFQAAEDPQYSVMAKVELK-KLFGKRTIKELTETNLSANQKKSAMRKLKWRVVG 203 LLRL HL++A EDP S A V+LK L G ++ + E +L+ +++ W Sbjct: 924 LLRLRHLYEAGEDPVLSRPATVDLKVVLRGLGSVVAVEERSLTGTWDVQMLQRWHWSTKT 983 Query: 202 DTESSHAPVTGSPVNDKVLVVELGPMEIRTFLVK 101 D H P ++ V P EIRTF +K Sbjct: 984 DHLKGHPTSPPRPPGGSIITVY--PKEIRTFFIK 1015
>MA2B2_PONPY (Q5RDJ3) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1009 Score = 40.0 bits (92), Expect = 0.003 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Frame = -2 Query: 379 LLRLGHLFQAAEDPQYSVMAKVELKK-LFGKRTIKELTETNLSANQKKSAMRKLKWRV-- 209 LLRL HL++ EDP S V L+ L ++ + E +L+ S + + WR Sbjct: 914 LLRLHHLYEVGEDPVLSQPVTVNLEAVLQALGSVVAVEERSLTGTWDVSMLHRWSWRTGS 973 Query: 208 ---VGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLV 104 GDT S P G ++ + P EIRTF + Sbjct: 974 GRRRGDTTSPSRPPGGP-------IITVHPKEIRTFFI 1004
>MA2B2_HUMAN (Q9Y2E5) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) Length = 1009 Score = 39.7 bits (91), Expect = 0.004 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 6/98 (6%) Frame = -2 Query: 379 LLRLGHLFQAAEDPQYSVMAKVELKK-LFGKRTIKELTETNLSANQKKSAMRKLKWRV-- 209 LLRL HL++ EDP S V L+ L ++ + E +L+ S + + WR Sbjct: 914 LLRLYHLYEVGEDPVLSQPVTVNLQAVLQALGSVVAVEERSLTGTWDLSMLHRWSWRTGP 973 Query: 208 ---VGDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLV 104 GDT S P G ++ + P EIRTF + Sbjct: 974 GRHRGDTTSPSRPPGGP-------IITVHPKEIRTFFI 1004
>COMD1_HUMAN (Q8N668) COMM domain-containing protein 1 (Protein Murr1)| Length = 190 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = -2 Query: 298 FGKRTIKELTETNLSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELG 131 F K ++ E+ ++ ++ S +R L WRV G ++S H+ +PV ++ +ELG Sbjct: 97 FWKSHKTKIRESLMNQSRWNSGLRGLSWRVDGKSQSRHSAQIHTPV--AIIELELG 150
>MA2B2_PIG (Q28949) Epididymis-specific alpha-mannosidase precursor (EC| 3.2.1.24) (Mannosidase alpha class 2B member 2) (AMAN) Length = 995 Score = 30.4 bits (67), Expect = 2.3 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 7/99 (7%) Frame = -2 Query: 379 LLRLGHLFQAAEDPQYSVMAKVELKK-LFGKRTIKELTETNLSANQKKSAMRKLKWRVV- 206 LLRL HL++A E S + L+ L G ++ + E +L+ +++ + W+ Sbjct: 899 LLRLHHLYEAGEHQALSRPVTLNLQSVLRGLGSVVAVEERSLTGTWDVNSLHRWSWKTED 958 Query: 205 -----GDTESSHAPVTGSPVNDKVLVVELGPMEIRTFLV 104 G + P+ G V + P EIRTF + Sbjct: 959 GHHHRGSSRRPLPPLRGPNVT-------IHPKEIRTFFI 990
>COMD1_CANFA (Q8WMD0) COMM domain-containing protein 1 (Protein Murr1)| Length = 188 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/56 (28%), Positives = 32/56 (57%) Frame = -2 Query: 298 FGKRTIKELTETNLSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELG 131 F K ++ E+ ++ ++ S +R L WRV G ++S H+ +PV ++ +E+G Sbjct: 96 FWKNHKTKIRESLMNQSRWDSGLRGLSWRVDGKSQSRHSAQIHTPV--AIMELEIG 149
>VPS1_YEAST (P21576) Vacuolar sorting protein 1| Length = 704 Score = 30.0 bits (66), Expect = 3.0 Identities = 14/33 (42%), Positives = 23/33 (69%) Frame = -2 Query: 319 KVELKKLFGKRTIKELTETNLSANQKKSAMRKL 221 KV L+KL+GK+ I+ELT+ N Q++ +K+ Sbjct: 658 KVLLEKLYGKQDIEELTKENDITIQRRKECKKM 690
>IDI_PHOPR (Q6LUX5) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) (IPP:DMAPP isomerase) Length = 180 Score = 29.6 bits (65), Expect = 3.9 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +1 Query: 13 AFAHRNERHNNLLEHAWNYITISLLLQLTVSP 108 +F +R E N L+EH W+++ I+ +L + P Sbjct: 104 SFVYRAELDNQLIEHEWDHVLIANGTELAIIP 135
>YKYB_BACSU (P42430) Hypothetical protein ykyB| Length = 154 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 124 PWVPARQQGLYH*PGYR*LGRDYF 195 P VP RQQ YH P ++ LG YF Sbjct: 131 PLVPNRQQPAYHKPVFKKLGESYF 154
>COMD1_MOUSE (Q8K4M5) COMM domain-containing protein 1 (Protein Murr1)| Length = 188 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = -2 Query: 310 LKKLFGKRTIKELTETNLSANQKKSAMRKLKWRVVGDTESSHAPVTGSPVNDKVLVVELG 131 + K + IK + E+ + ++ + +R L WRV G ++S H+ SPV ++ +E G Sbjct: 93 ISKFWKSHKIK-IRESLMKQSRWDNGLRGLSWRVDGKSQSRHSTQIHSPV--AIIELEFG 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,315,985 Number of Sequences: 219361 Number of extensions: 1197159 Number of successful extensions: 3256 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3243 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
