Clone Name | rbastl16b12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C09, full insert sequence Length = 3192 Score = 119 bits (60), Expect = 8e-24 Identities = 105/120 (87%) Strand = Plus / Minus Query: 322 ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381 |||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 2822 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2763 Query: 382 gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441 |||||||| ||||||| || || ||||||| ||||||||||| ||| ||||||||||| Sbjct: 2762 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggccttctcaac 2703
>dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037E13, full insert sequence Length = 3441 Score = 119 bits (60), Expect = 8e-24 Identities = 105/120 (87%) Strand = Plus / Minus Query: 322 ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381 |||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 2600 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2541 Query: 382 gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441 |||||||| ||||||| || || ||||||| ||||||||||| ||| ||||||||||| Sbjct: 2540 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggccttctcaac 2481
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 322 ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381 |||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 37993877 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 37993818 Query: 382 gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagcct 434 |||||||| ||||||| || || ||||||| ||||||||||| ||| |||| Sbjct: 37993817 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 37993765
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 322 ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381 |||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 74821 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 74762 Query: 382 gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagcct 434 |||||||| ||||||| || || ||||||| ||||||||||| ||| |||| Sbjct: 74761 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 74709
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 105 bits (53), Expect = 1e-19 Identities = 98/113 (86%) Strand = Plus / Minus Query: 322 ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381 |||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 90153 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 90094 Query: 382 gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagcct 434 |||||||| ||||||| || || ||||||| ||||||||||| ||| |||| Sbjct: 90093 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 90041
>ref|XM_463519.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2325 Score = 103 bits (52), Expect = 5e-19 Identities = 91/104 (87%) Strand = Plus / Minus Query: 322 ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381 |||||| |||||||| ||||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 2325 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2266 Query: 382 gaatccctcatctgacagcgaaactgtacagctattcatgttca 425 |||||||| ||||||| || || ||||||| ||||||||||| Sbjct: 2265 aaatccctcgtctgacaaggagacggtacagccattcatgttca 2222
>gb|BT017444.1| Zea mays clone EL01N0405G07.c mRNA sequence Length = 694 Score = 77.8 bits (39), Expect = 3e-11 Identities = 99/119 (83%) Strand = Plus / Minus Query: 323 taagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctccg 382 ||||||||||| ||||| |||||||||||||||||||| ||||||||| ||| | || Sbjct: 607 taagaacagtccgcttcgatggcaagtgttttggtgactccagggcataaatccttccca 548 Query: 383 aatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441 || | ||| |||| ||| || ||||||||||| || |||||| ||| ||||||||||| Sbjct: 547 aagctctcgtctgtcagggagactgtacagctgttggtgttcagacaggccttctcaac 489
>gb|AY104108.1| Zea mays PCO105395 mRNA sequence Length = 1246 Score = 61.9 bits (31), Expect = 2e-06 Identities = 97/119 (81%) Strand = Plus / Minus Query: 323 taagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctccg 382 ||||||||||| ||||| ||||| |||||||||||||| ||| ||||| ||| | || Sbjct: 992 taagaacagtccgcttcgatggcgagtgttttggtgactccatggcataaatccttccca 933 Query: 383 aatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441 || | ||| |||| ||| || ||||||||||| || |||||| ||| ||||||||||| Sbjct: 932 aagctctcgtctgtcagggagactgtacagctgttggtgttcagacaggccttctcaac 874
>gb|AE006100.1| Pasteurella multocida subsp. multocida str. Pm70 section 67 of 204 of the complete genome Length = 13317 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 aagttcatgatgcattctaca 113 ||||||||||||||||||||| Sbjct: 5082 aagttcatgatgcattctaca 5062
>gb|AE006850.1| Sulfolobus solfataricus P2 section 209 of 272 of the complete genome Length = 10755 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 acatcagcattccaacacttatta 86 |||| ||||||||||||||||||| Sbjct: 5640 acatgagcattccaacacttatta 5617
>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence Length = 141509 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 caacacttattatatagaaa 94 |||||||||||||||||||| Sbjct: 72053 caacacttattatatagaaa 72072
>emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chromosome 1 Contains the 5' end of the ZA20D1 gene for zinc finger, A20 domain containing 1, a ribosomal protein L6 (RPL6) pseudogene, the VPS45A gene for vacuolar protein sorting 45A (yeast), the gene for CK2 interacting protein 1; HQ0024c protein (CKIP-1), a novel gene and a CpG island, complete sequence Length = 188211 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 attccaacacttattatatagaaa 94 ||||||| |||||||||||||||| Sbjct: 53879 attccaagacttattatatagaaa 53856
>gb|AC099525.5| Papio anubis clone RP41-277O17, complete sequence Length = 163567 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 caacacttattatatagaaa 94 |||||||||||||||||||| Sbjct: 48481 caacacttattatatagaaa 48500
>emb|AL772382.29| Zebrafish DNA sequence from clone CH211-194E18 in linkage group 6, complete sequence Length = 97318 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 82 tattatatagaaagttcatgatgcattc 109 ||||||||||||| ||||| |||||||| Sbjct: 10019 tattatatagaaatttcataatgcattc 10046
>emb|AL831730.18| Zebrafish DNA sequence from clone DKEY-76A17 in linkage group 6, complete sequence Length = 159826 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 82 tattatatagaaagttcatgatgcattc 109 ||||||||||||| ||||| |||||||| Sbjct: 118226 tattatatagaaatttcataatgcattc 118199
>emb|AJ296029.1|SSO296029 Sulfolobus solfataricus celS gene for cellulase Length = 1117 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 acatcagcattccaacacttatta 86 |||| ||||||||||||||||||| Sbjct: 792 acatgagcattccaacacttatta 815 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,514,101 Number of Sequences: 3902068 Number of extensions: 3514101 Number of successful extensions: 58787 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58753 Number of HSP's gapped (non-prelim): 32 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)