ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
2dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
4dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
5dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
6ref|XM_463519.1| Oryza sativa (japonica cultivar-group), predic... 103 5e-19
7gb|BT017444.1| Zea mays clone EL01N0405G07.c mRNA sequence 78 3e-11
8gb|AY104108.1| Zea mays PCO105395 mRNA sequence 62 2e-06
9gb|AE006100.1| Pasteurella multocida subsp. multocida str. Pm70 ... 42 1.5
10gb|AE006850.1| Sulfolobus solfataricus P2 section 209 of 272 of ... 40 5.9
11gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, comple... 40 5.9
12emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chr... 40 5.9
13gb|AC099525.5| Papio anubis clone RP41-277O17, complete sequence 40 5.9
14emb|AL772382.29| Zebrafish DNA sequence from clone CH211-194E18 ... 40 5.9
15emb|AL831730.18| Zebrafish DNA sequence from clone DKEY-76A17 in... 40 5.9
16emb|AJ296029.1|SSO296029 Sulfolobus solfataricus celS gene for c... 40 5.9

>dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C09, full
            insert sequence
          Length = 3192

 Score =  119 bits (60), Expect = 8e-24
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                        
Query: 322  ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381
            |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 2822 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2763

                                                                        
Query: 382  gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441
             |||||||| |||||||  || || ||||||| ||||||||||| ||| |||||||||||
Sbjct: 2762 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggccttctcaac 2703



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>dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037E13, full
            insert sequence
          Length = 3441

 Score =  119 bits (60), Expect = 8e-24
 Identities = 105/120 (87%)
 Strand = Plus / Minus

                                                                        
Query: 322  ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381
            |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 2600 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2541

                                                                        
Query: 382  gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441
             |||||||| |||||||  || || ||||||| ||||||||||| ||| |||||||||||
Sbjct: 2540 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggccttctcaac 2481



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  105 bits (53), Expect = 1e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                            
Query: 322      ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381
                |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 37993877 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 37993818

                                                                     
Query: 382      gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagcct 434
                 |||||||| |||||||  || || ||||||| ||||||||||| ||| ||||
Sbjct: 37993817 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 37993765



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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score =  105 bits (53), Expect = 1e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                         
Query: 322   ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381
             |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 74821 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 74762

                                                                  
Query: 382   gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagcct 434
              |||||||| |||||||  || || ||||||| ||||||||||| ||| ||||
Sbjct: 74761 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 74709



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>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score =  105 bits (53), Expect = 1e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                         
Query: 322   ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381
             |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 90153 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 90094

                                                                  
Query: 382   gaatccctcatctgacagcgaaactgtacagctattcatgttcatacaagcct 434
              |||||||| |||||||  || || ||||||| ||||||||||| ||| ||||
Sbjct: 90093 aaatccctcgtctgacaaggagacggtacagccattcatgttcagacaggcct 90041



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>ref|XM_463519.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2325

 Score =  103 bits (52), Expect = 5e-19
 Identities = 91/104 (87%)
 Strand = Plus / Minus

                                                                        
Query: 322  ttaagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctcc 381
            |||||| |||||||| ||||| ||||||||||||||||| |||||||||  |||||||||
Sbjct: 2325 ttaagagcagtctgcctcaatcgcaagtgttttggtgaccccagggcataaatcttctcc 2266

                                                        
Query: 382  gaatccctcatctgacagcgaaactgtacagctattcatgttca 425
             |||||||| |||||||  || || ||||||| |||||||||||
Sbjct: 2265 aaatccctcgtctgacaaggagacggtacagccattcatgttca 2222



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>gb|BT017444.1| Zea mays clone EL01N0405G07.c mRNA sequence
          Length = 694

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Minus

                                                                       
Query: 323 taagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctccg 382
           ||||||||||| ||||| |||||||||||||||||||| |||||||||  ||| |  || 
Sbjct: 607 taagaacagtccgcttcgatggcaagtgttttggtgactccagggcataaatccttccca 548

                                                                      
Query: 383 aatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441
           || | ||| |||| ||| || ||||||||||| ||  |||||| ||| |||||||||||
Sbjct: 547 aagctctcgtctgtcagggagactgtacagctgttggtgttcagacaggccttctcaac 489



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>gb|AY104108.1| Zea mays PCO105395 mRNA sequence
          Length = 1246

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Minus

                                                                       
Query: 323 taagaacagtctgcttcaatggcaagtgttttggtgacgccagggcatggatcttctccg 382
           ||||||||||| ||||| ||||| |||||||||||||| ||| |||||  ||| |  || 
Sbjct: 992 taagaacagtccgcttcgatggcgagtgttttggtgactccatggcataaatccttccca 933

                                                                      
Query: 383 aatccctcatctgacagcgaaactgtacagctattcatgttcatacaagccttctcaac 441
           || | ||| |||| ||| || ||||||||||| ||  |||||| ||| |||||||||||
Sbjct: 932 aagctctcgtctgtcagggagactgtacagctgttggtgttcagacaggccttctcaac 874



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>gb|AE006100.1| Pasteurella multocida subsp. multocida str. Pm70 section 67 of 204 of
            the complete genome
          Length = 13317

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 93   aagttcatgatgcattctaca 113
            |||||||||||||||||||||
Sbjct: 5082 aagttcatgatgcattctaca 5062



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>gb|AE006850.1| Sulfolobus solfataricus P2 section 209 of 272 of the complete genome
          Length = 10755

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 63   acatcagcattccaacacttatta 86
            |||| |||||||||||||||||||
Sbjct: 5640 acatgagcattccaacacttatta 5617



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>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence
          Length = 141509

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    caacacttattatatagaaa 94
             ||||||||||||||||||||
Sbjct: 72053 caacacttattatatagaaa 72072



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>emb|AL358073.24| Human DNA sequence from clone RP11-458I7 on chromosome 1 Contains the
             5' end of the ZA20D1 gene for zinc finger, A20 domain
             containing 1, a ribosomal protein L6 (RPL6) pseudogene,
             the VPS45A gene for vacuolar protein sorting 45A (yeast),
             the gene for CK2 interacting protein 1; HQ0024c protein
             (CKIP-1), a novel gene and a CpG island, complete sequence
          Length = 188211

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    attccaacacttattatatagaaa 94
             ||||||| ||||||||||||||||
Sbjct: 53879 attccaagacttattatatagaaa 53856



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>gb|AC099525.5| Papio anubis clone RP41-277O17, complete sequence
          Length = 163567

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    caacacttattatatagaaa 94
             ||||||||||||||||||||
Sbjct: 48481 caacacttattatatagaaa 48500



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>emb|AL772382.29| Zebrafish DNA sequence from clone CH211-194E18 in linkage group 6,
             complete sequence
          Length = 97318

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 82    tattatatagaaagttcatgatgcattc 109
             ||||||||||||| ||||| ||||||||
Sbjct: 10019 tattatatagaaatttcataatgcattc 10046



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>emb|AL831730.18| Zebrafish DNA sequence from clone DKEY-76A17 in linkage group 6, complete
              sequence
          Length = 159826

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 82     tattatatagaaagttcatgatgcattc 109
              ||||||||||||| ||||| ||||||||
Sbjct: 118226 tattatatagaaatttcataatgcattc 118199



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>emb|AJ296029.1|SSO296029 Sulfolobus solfataricus celS gene for cellulase
          Length = 1117

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 63  acatcagcattccaacacttatta 86
           |||| |||||||||||||||||||
Sbjct: 792 acatgagcattccaacacttatta 815


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,514,101
Number of Sequences: 3902068
Number of extensions: 3514101
Number of successful extensions: 58787
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58753
Number of HSP's gapped (non-prelim): 32
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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