ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TPMT_VIBF1 (Q5E4N9) Thiopurine S-methyltransferase (EC 2.1.1.67)... 32 0.48
2PPCK_WIGBR (Q8D1X9) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 30 1.1
3RASA2_HUMAN (Q15283) Ras GTPase-activating protein 2 (GAP1m) 30 1.4
4SWF1_ASHGO (Q74ZZ2) Palmitoyltransferase SWF1 (EC 2.3.1.-) 30 1.8
5ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1... 29 3.1
6MTH14_DROME (Q8SYV9) Probable G-protein coupled receptor Mth-lik... 28 5.3
7MDR1_CAEEL (P34712) Multidrug resistance protein 1 (EC 3.6.3.44)... 28 6.9
8MURC_BIFLO (Q8G4Q4) UDP-N-acetylmuramate--L-alanine ligase (EC 6... 28 6.9
9ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor AT... 28 6.9
10ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-... 27 9.0
11ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor AT... 27 9.0

>TPMT_VIBF1 (Q5E4N9) Thiopurine S-methyltransferase (EC 2.1.1.67) (Thiopurine|
           methyltransferase)
          Length = 213

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -2

Query: 190 NFYGFHTPLAKMYEDQRQPLANGRRNKTLFVPVFVLCGSHRRNV*LIHLDMIGKRHN 20
           N  GFH P       Q       +RN+T+FVP   LCG        + LD + +RHN
Sbjct: 13  NVIGFHLPDTNPILTQYWSALEPKRNETVFVP---LCGKS------MDLDWLAERHN 60



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>PPCK_WIGBR (Q8D1X9) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 541

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 214 NCCWWITQNFY--GFHTPLAKMYEDQRQPLANGRRNKTLFVPVFVLCGSHRRN 62
           N  WW   N +    H    + ++D ++ +AN   NK LFV +   CG++++N
Sbjct: 79  NIIWWSDDNNHKSNNHPINNETWKDLKKLIANNLNNKKLFV-IDAFCGANKKN 130



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>RASA2_HUMAN (Q15283) Ras GTPase-activating protein 2 (GAP1m)|
          Length = 849

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 22  CDVFLSCQDGSVIHFGDESHTRQKQGQKASCFFCHLLVAVVDPHTF 159
           CD+F S +  +   F ++ H  Q     +  F     VAVV PHTF
Sbjct: 479 CDIFYSLRQMATQRFPNDPHV-QYSAVSSFVFLRFFAVAVVSPHTF 523



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>SWF1_ASHGO (Q74ZZ2) Palmitoyltransferase SWF1 (EC 2.3.1.-)|
          Length = 326

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +1

Query: 46  DGSVIHFGDESHTRQ--KQGQKASCFFCHLLVAVVDPHTFWRAACEIRRNFG 195
           DG + H G E  T +  K  +   C  C   V + D H  W   C  R N+G
Sbjct: 116 DGLLFHDGVECRTCRVRKPARSRHCGVCGRCVPLADHHCVWLNNCVGRGNYG 167



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>ATG26_YARLI (Q6C8M8) Sterol 3-beta-glucosyltransferase (EC 2.4.1.173)|
           (Autophagy-related protein 26)
          Length = 1424

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 204 QQQLNPPPRSLVQRPNHDAN*TFQSETSLG--RRRRALIDLLRTSKWMGLLFPFP 362
           +++L PPPR L+Q P H +    QS T+    R  R  + L R +  + LL   P
Sbjct: 40  RRRLQPPPRLLIQAPIHPSRHCTQSRTAHRSIRSPRRCLTLCRLTLSVTLLLTKP 94



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>MTH14_DROME (Q8SYV9) Probable G-protein coupled receptor Mth-like 14 precursor|
           (Protein methuselah-like 14)
          Length = 533

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +1

Query: 4   LMYTNNCDVFLSCQDGSVI---HFGDESHT 84
           L+Y +  DVF   QDGS++    FG+ES+T
Sbjct: 181 LLYDDKDDVFFVLQDGSLLIIDKFGNESYT 210



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>MDR1_CAEEL (P34712) Multidrug resistance protein 1 (EC 3.6.3.44)|
           (P-glycoprotein A)
          Length = 1321

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 19  NCDVFLSCQDGSVIHFGDESHTRQKQG 99
           N D+ +SC++G V+  GD      +QG
Sbjct: 618 NADLIISCKNGQVVEVGDHRALMAQQG 644



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>MURC_BIFLO (Q8G4Q4) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 512

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 28  VFLSCQDGSVIHFGDESHTRQKQGQKASCFFCHLLVAVVDP 150
           +  +C+   + H+GDE+H R      A     H+++++ DP
Sbjct: 201 IITNCEADHLDHYGDEAHYRAAFVAHAGRATGHVIISIDDP 241



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>ATF2_HUMAN (P15336) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (HB16)
          Length = 487

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 207 QQLNPPPRSLVQRPNHDAN*TFQSETSLGRRRRA 308
           Q L  P  S  + P   A+ T Q++++ GRRRRA
Sbjct: 295 QSLQQPATSTTETPASPAHTTPQTQSTSGRRRRA 328



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>ATF2_RAT (Q00969) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1)
          Length = 487

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 207 QQLNPPPRSLVQRPNHDAN*TFQSETSLGRRRRA 308
           Q L  P  S  + P   A+ T Q++ + GRRRRA
Sbjct: 295 QSLQQPATSTTETPASPAHTTPQTQNTSGRRRRA 328



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>ATF2_MOUSE (P16951) Cyclic AMP-dependent transcription factor ATF-2|
           (Activating transcription factor 2) (cAMP response
           element-binding protein CRE-BP1) (MXBP protein)
          Length = 487

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 207 QQLNPPPRSLVQRPNHDAN*TFQSETSLGRRRRA 308
           Q L  P  S  + P   A+ T Q++ + GRRRRA
Sbjct: 295 QSLQQPATSTTETPASPAHTTPQTQNTSGRRRRA 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,172,819
Number of Sequences: 219361
Number of extensions: 1079701
Number of successful extensions: 2294
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2294
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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