>PYRB_BACTN (Q8A9S3) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 313

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/69 (26%), Positives = 36/69 (52%)
 Frame = -3

Query: 261 CRNDFPKFRKHTEQKGTTEDNIEKEGLKHMILIRRGKLNLQVEYVSIRK*LLLPNVILQM 82
           C+    K+ +HTE    TE+ I    + +M  ++R +    +EY  ++   +L N +L+ 
Sbjct: 196 CKEHQIKYIEHTE---FTEEIIADADILYMTRVQRERFTDLMEYERVKNVYILRNKMLEN 252

Query: 81  TKLTVNILY 55
           T+  + IL+
Sbjct: 253 TRPNLRILH 261

>PUB2_SCHPO (Q9UTG2) E3 ubiquitin--protein ligase pub2 (EC 6.3.2.-)|
          Length = 671

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -3

Query: 294 YAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNIEKEGLKHMI 169
           + K+E L P++ +  F +F  + + K + + N+E + +KH++
Sbjct: 183 HEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHLL 224

>YCF2_MARPO (P09975) Protein ycf2|
          Length = 2136

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 125  LTYSTCKFNFPRLIRIICFRPSFSILSSV-VPFCSVCFLNLG 247
            LTY+  K NF R+ +I+ ++   +I+ ++ +   S+  LN+G
Sbjct: 1623 LTYTNNKLNFDRIFKIVIYKVGKTIIQNILIKSSSMNLLNIG 1664

>ULA1_SCHPO (Q9UT93) NEDD8-activating enzyme E1 regulatory subunit|
           (Ubiquitin-like activation protein 1)
           (Ubiquitin-activating enzyme E1-like 1)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 306 SRDQYAKVEGLVPERCRNDFPKFRKHTEQ 220
           S  QY K++ +  E+  ND  KF+K+ +Q
Sbjct: 322 STQQYVKLQVIYKEKSENDILKFKKYVQQ 350

>CYAA_SACKL (P23466) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 1839

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 303 RDQYAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNIEKE 187
           R+++ ++E    E   N  PKF+KH     TT  N E +
Sbjct: 14  REKHPQIEETFEEHVHNAMPKFKKHYALGITTHTNDEDD 52

>PPCK_RHOPA (Q9ZNH4) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP|
           carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK)
          Length = 537

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 303 RDQYAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNI 196
           R + A++E  VPE    D P FR   ++ G   +N+
Sbjct: 143 RPERAELENFVPELTLIDLPSFRADPKRHGCRSENV 178

>RNPH_BACSK (Q5WEM3) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA|
           nucleotidyltransferase)
          Length = 250

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = -3

Query: 312 CYSRDQYAKVEGLVPERCRNDFPKFRKHTEQKGTTEDNIEK------EGLKHMILIRRGK 151
           CYS D  AKV+  + +    DF + +   E+   T   + +      EG+  +I I+R  
Sbjct: 177 CYSEDSQAKVDMNIVQTGSGDFVEVQGSGEEAVYTRSELNELLDLAAEGIDQLIHIQRPF 236

Query: 150 LNLQVEYVSIRK 115
           L     ++  +K
Sbjct: 237 LGEAASWIEEKK 248

>AMIB_HAEIN (P44493) Probable N-acetylmuramoyl-L-alanine amidase amiB precursor|
           (EC 3.5.1.28)
          Length = 432

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 282 EGLVPERCRNDFPKFRKH--TEQKGTTEDNIEKEGLKHMI 169
           + LV    +ND  K  K+  T ++   EDNI+  G++H++
Sbjct: 257 DNLVQNIKQNDIKKSGKNNRTSEQNINEDNIKDSGIRHIV 296

>ENGA_HAEDU (Q7VM29) GTP-binding protein engA|
          Length = 510

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
 Frame = -3

Query: 225 EQKGTTEDNI----EKEGLKHMILI-----RRGKLNLQVEYVSIRK 115
           +  GTT D+I    E++G ++ I+      +RGK+NL VE  S+ K
Sbjct: 249 DMPGTTRDSIYIPMERDGQEYTIIDTAGVRKRGKINLAVEKFSVIK 294


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,866,223
Number of Sequences: 219361
Number of extensions: 829473
Number of successful extensions: 1971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)