ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16b04 |
|---|---|
| Clone Library Name | barley_pub |
>RCO1_NEUCR (P78706) Transcriptional repressor rco-1| Length = 604 Score = 35.4 bits (80), Expect = 0.037 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Frame = +2 Query: 116 FRLRCQSPESPSFWCPEEVQRSDSCCQHWRRP-GRPPAAGAQTPDSTGHHPW*GGQRRNP 292 F+ + Q P+ P + P+ Q + S +R GRPPA G TP P+ GG ++P Sbjct: 166 FQQQYQGPQGPGNFPPQPPQSTASPGPAGKRGIGRPPAGGPATPQINTPIPYNGGPAQSP 225 Query: 293 Q 295 Q Sbjct: 226 Q 226
>DLX5_CHICK (P50577) Homeobox protein DLX-5 (cDlx)| Length = 286 Score = 32.0 bits (71), Expect = 0.40 Identities = 18/61 (29%), Positives = 27/61 (44%) Frame = +2 Query: 83 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDSTGHH 262 S S S+P + C SP+SP+ W P+ RS H P P+ G+ + + Sbjct: 205 SPSSSDP------MACNSPQSPAVWEPQGSSRSLGHHGHGHPPAANPSPGSYLESPSAWY 258 Query: 263 P 265 P Sbjct: 259 P 259
>NBN_BRARE (Q5I2W8) Nibrin (Nijmegen breakage syndrome protein 1 homolog)| Length = 818 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -2 Query: 233 LQLQEAGPDVSNVDSMNQISELPPDTRRMGSLEIG-TADESP 111 +QL AGP V+N D+ Q PPD S G T +++P Sbjct: 624 MQLDRAGPAVTNQDTQTQSKRSPPDLEAHSSANKGPTKNKTP 665
>PSD_ZYMMO (Q9X5E3) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 246 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Frame = +3 Query: 48 FSVHQLREGIVGRHLRVIHVCGAFVCGANLQRAHPSGVRRKFR-DLIHAVNIGDVR-AGL 221 F VH R + GR R+ ++ GAFV A+L +A R+ F + +N+G + AGL Sbjct: 118 FDVHINRAPVPGRIARIAYIPGAFV-NADLDKASEKNERQHFMIETKEGINVGLTQIAGL 176 Query: 222 L 224 + Sbjct: 177 I 177
>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 577 Score = 29.6 bits (65), Expect = 2.0 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 10/51 (19%) Frame = -3 Query: 265 WVMSC----------GIWSLCSSCRRPARTSPMLTA*IRSLNFLRTPEGWA 143 WV SC G++ + +SC P RT PML R L+ L T G++ Sbjct: 412 WVESCVAFNHSYTDSGLFGIAASCY-PGRTLPMLQVMCRELHALTTDHGYS 461
>LIME1_HUMAN (Q9H400) Lck-interacting transmembrane adapter 1 (Lck-interacting| membrane protein) (Lck-interacting molecule) Length = 295 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 5/22 (22%) Frame = -3 Query: 265 WVMSC-----GIWSLCSSCRRP 215 WV+ C +W+LC++CRRP Sbjct: 13 WVLGCCALLLSLWALCTACRRP 34
>YBY3_SCHPO (Q10198) Hypothetical protein C11C11.03 in chromosome II| Length = 624 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/65 (23%), Positives = 29/65 (44%) Frame = -2 Query: 248 NLEFVLQLQEAGPDVSNVDSMNQISELPPDTRRMGSLEIGTADESPTNMDYSQMSTNDAF 69 N +F L++ GP+ N+D N++ + RR +LE + + ND Sbjct: 439 NNDFELEINPEGPNYINLDLKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLI 498 Query: 68 SQLMN 54 ++L + Sbjct: 499 AELQD 503
>CYDB_BACSU (P94365) Cytochrome d ubiquinol oxidase subunit 2 (EC 1.10.3.-)| (Cytochrome d ubiquinol oxidase subunit II) Length = 338 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 307 SKSVLRITALTALPWVMSCGIWSLCSSCRRPARTSPM 197 S V+ I ALT LP+V+ IWS +R + PM Sbjct: 300 SLKVMSIAALTLLPFVIGSQIWSYYVFRKRVSHKEPM 336
>DLX5_RAT (P50575) Homeobox protein DLX-5 (DLX-3) (RDLX)| Length = 289 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +2 Query: 83 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDST 253 S S S+P + C SP+SP+ W P+ RS S P P Q+P S+ Sbjct: 206 SPSSSDP------MACNSPQSPAVWEPQGSSRSLS-----HHPHAHPPTSNQSPASS 251
>DLX5_MOUSE (P70396) Homeobox protein DLX-5| Length = 289 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +2 Query: 83 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDST 253 S S S+P + C SP+SP+ W P+ RS S P P Q+P S+ Sbjct: 206 SPSSSDP------MACNSPQSPAVWEPQGSSRSLS-----HHPHAHPPTSNQSPASS 251
>DLX5_HUMAN (P56178) Homeobox protein DLX-5| Length = 289 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +2 Query: 83 STSESNPCLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDST 253 S S S+P + C SP+SP+ W P+ RS S P P Q+P S+ Sbjct: 206 SPSSSDP------MACNSPQSPAVWEPQGSSRSLS-----HHPHAHPPTSNQSPASS 251
>POLG_PRSVH (Q01901) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3344 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%) Frame = +3 Query: 15 DTETILSSSPPFSVHQLREGIV-----GRHL--RVIHVCGAFVCGANLQRAHPSGVRRKF 173 D + + SP + VH++ + + G + R+I+ CGAF+ +++ G F Sbjct: 1200 DLKIVYDFSPKYCVHEVGKAFLLPVKAGAKIASRIINGCGAFI-----RKSAAKGCAYIF 1254 Query: 174 RDLIHAVNIGDVRAGLLQLEHKLQ 245 +DL V++ V + LLQ+ Q Sbjct: 1255 KDLFQFVHVVLVLSILLQIFRSAQ 1278
>AX2_BETVU (P82010) Antifungal protein AX2| Length = 46 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +2 Query: 38 FTSLQCSSAARRHRWSTSESNPCLWGFRLRCQSP 139 F+ C A R W + CL GF+ CQ P Sbjct: 15 FSDTNCQKACNREDWPNGK---CLVGFKCECQRP 45
>EPHB6_PANTR (P0C0K6) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1005 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -2 Query: 212 PDVSNVDSMNQISELPPDTRRMGSLEIGTADESPT 108 P + V ++N +SEL PD + ++ + T+ E P+ Sbjct: 439 PYILEVQAVNGVSELSPDPPQAAAINVSTSHEVPS 473
>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1013 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -2 Query: 212 PDVSNVDSMNQISELPPDTRRMGSLEIGTADESPT 108 P + V ++N +SEL PD + ++ + T+ E P+ Sbjct: 447 PYILEVQAVNGVSELSPDPPQAAAINVSTSHEVPS 481
>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (MEP) Length = 1014 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -2 Query: 212 PDVSNVDSMNQISELPPDTRRMGSLEIGTADESPT 108 P + V ++N +SEL PD + ++ + T+ E P+ Sbjct: 448 PYILEVQAVNGVSELSPDPPQAAAINVSTSHEVPS 482
>WNTG_DROME (P09615) Protein wingless precursor (Protein Wnt-1) (dWnt-1)| (Protein int-1) (dInt-1) Length = 468 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +3 Query: 30 LSSSPPFSVHQLREGIVGRHLRV-------IHVCGAFVCGANLQR 143 L SP F LR+GI+G H R + CG CG +R Sbjct: 390 LEPSPSFCEKNLRQGILGTHGRQCNETSLGVDGCGLMCCGRGYRR 434
>EPHB6_HUMAN (O15197) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (HEP) Length = 1006 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/35 (31%), Positives = 21/35 (60%) Frame = -2 Query: 212 PDVSNVDSMNQISELPPDTRRMGSLEIGTADESPT 108 P + V ++N +SEL PD + ++ + T+ E P+ Sbjct: 440 PYILEVQAVNGVSELSPDPPQAAAINVSTSHEVPS 474
>GABR1_HUMAN (Q9UBS5) Gamma-aminobutyric acid type B receptor, subunit 1| precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1) Length = 961 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 7/30 (23%) Frame = +2 Query: 215 RPPAAG-AQTPDSTG------HHPW*GGQR 283 RPP AG AQTP++T H PW GG R Sbjct: 13 RPPGAGGAQTPNATSEGCQIIHPPWEGGIR 42
>EM13_ECHMU (Q07840) Antigen EM13| Length = 426 Score = 28.5 bits (62), Expect = 4.5 Identities = 22/79 (27%), Positives = 31/79 (39%) Frame = -2 Query: 278 DRPTMGDVLWNLEFVLQLQEAGPDVSNVDSMNQISELPPDTRRMGSLEIGTADESPTNMD 99 D + G L +L+ + GP DS + IS P T GS E T D Sbjct: 279 DGSSGGVTLTSLKTITSPDRGGPIPGTTDSGSNISTSPVHTTAYGSNSYDHGSEGATPSD 338 Query: 98 YSQMSTNDAFSQLMNTEGR 42 Y+ S N A + + + R Sbjct: 339 YTS-SVNGAAAAISKEKQR 356
>CERK1_HUMAN (Q8TCT0) Ceramide kinase (EC 2.7.1.138) (Acylsphingosine kinase)| (hCERK) (Lipid kinase 4) (LK4) Length = 537 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/42 (30%), Positives = 18/42 (42%) Frame = +2 Query: 44 SLQCSSAARRHRWSTSESNPCLWGFRLRCQSPESPSFWCPEE 169 ++ C ARRHRW ++ +FWCPEE Sbjct: 85 TVHCVKRARRHRWKWAQ-----------------VTFWCPEE 109
>Y105_DROME (Q9V719) Hypothetical protein CG10105| Length = 569 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Frame = +2 Query: 197 HWRRPGR-PPAAGAQTPDSTGHHP 265 HWRR + PP G TP+ HP Sbjct: 55 HWRRAHKTPPTGGGTTPERNTRHP 78
>YNC3_CAEEL (P34536) Putative zinc finger protein R05D3.3| Length = 421 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = +3 Query: 33 SSSPPFSVHQLREGIVGRHLRVIHV-CGAFVCGAN 134 +S P + QLRE GR+ V+ V C ++C N Sbjct: 186 ASGPTSEIQQLREAAFGRYKNVLCVICNEWICSRN 220
>TILS_GEOSL (Q74C65) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 471 Score = 28.1 bits (61), Expect = 5.8 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%) Frame = +3 Query: 9 LGDTETILSSSPPFSVHQLREGIVGRHLRVIHVCGAFVCGANLQRAHPSGVRRKFRDLIH 188 L D E +LS +L E + RH+ V GA +C + R P G+RR+ Sbjct: 234 LADDEALLS--------RLVEEALRRHVMVTEQGGA-ICSVDTLRREPRGLRRRLYRKAI 284 Query: 189 AVNIGDVRAGLLQLEH---------------KLQIPQDITHGRAVNAV 287 A+ GD+ + +H +L +P++I R+ N V Sbjct: 285 ALAKGDL--ARISFDHVDAIDRLVLSENPSGRLHLPEEILVTRSYNEV 330
>CRDL2_HUMAN (Q6WN34) Chordin-like protein 2 precursor (Chordin-related protein| 2) (Breast tumor novel factor 1) (BNF-1) Length = 429 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/53 (26%), Positives = 19/53 (35%) Frame = +2 Query: 104 CLWGFRLRCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTPDSTGHH 262 C G + C P CP+ V CC P P +G + P + H Sbjct: 63 CSEGAHVSCYRLHCPPVHCPQPVTEPQQCCPKCVEPHTP--SGLRAPPKSCQH 113
>NDK_DESPS (Q6ALU8) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP| kinase) (Nucleoside-2-P kinase) Length = 137 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 168 KFRDLIHAVNIGDVRAGLLQLEHKLQIPQDITHG 269 K+RDL+ A N D + G L+ E + ++ THG Sbjct: 83 KWRDLMGATNPADAKPGSLRREFGTIVGENATHG 116
>PPNK_NATPD (Q3IR96) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 270 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = -2 Query: 281 VDRPTMGDVLWNLEFVLQLQEAGPDVSNVDSMNQISELPPDTRRMGSLEI 132 V+R GD L+ + QLQ GP +S ++N+++ L P R L+I Sbjct: 103 VERMQAGDA--ELQELPQLQATGPGLSLPAAVNEVAVLGPQRGRDNGLDI 150
>CRIM1_BRARE (Q7T3Q2) Cysteine-rich motor neuron 1 protein precursor (CRIM-1)| Length = 1027 Score = 27.7 bits (60), Expect = 7.6 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = +2 Query: 119 RLRCQSPESPSFWCPEEVQRSDSCCQH 199 R+ C++ P C ++ DSCC H Sbjct: 702 RVLCETEVCPPLLCHSPIRTQDSCCPH 728
>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding| protein xGLI4) (xGLI-4) Length = 1361 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%) Frame = -2 Query: 227 LQEAGPDVSNVDSMNQISELP--PDTRRMGSLEIGTADE 117 L+E P V + S Q S P P+T+R+ S E GTA+E Sbjct: 547 LEETSPVVDSTVSSWQRSGRPATPETQRIHSAETGTAEE 585
>GAK3_HUMAN (Q9YNA8) HERV-K_19q12 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K(C19) Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +2 Query: 125 RCQSPESPSFWCPEEVQRSDSCCQHWRRPGRPPAAGAQTP 244 + Q P + +W P E+Q + PG PPA + P Sbjct: 202 KTQPPVAYQYWPPAELQYRPPLESQYGYPGMPPAPQGRAP 241
>MIK1_SCHPO (P30290) Mitosis inhibitor protein kinase mik1 (EC 2.7.11.1)| Length = 581 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 11/47 (23%) Frame = +2 Query: 41 TSLQCSSAARRHRWSTSESN-----------PCLWGFRLRCQSPESP 148 TSL ++R +WS E N PC G +++ + P+SP Sbjct: 129 TSLSTGLLSKREKWSLWEGNLTNPRSEQPHTPCKKGTKIKLKPPQSP 175
>HPPA_FUSNN (Q8RHJ2) Pyrophosphate-energized proton pump (EC 3.6.1.1)| (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) Length = 671 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -2 Query: 287 YGVDRPTMGDVLWNLEFVLQLQEAGPDVSNVDSMNQISELPPDTR 153 YG+ +G +L V+ + GP N + ++SELPP+ R Sbjct: 393 YGISIAAVG-MLATTGMVVAVDAYGPVADNAGGIAEMSELPPEVR 436
>ASXL1_MOUSE (P59598) Putative Polycomb group protein ASXL1 (Additional sex| combs-like protein 1) Length = 1514 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 8/49 (16%) Frame = +2 Query: 128 CQSPESPSFW--------CPEEVQRSDSCCQHWRRPGRPPAAGAQTPDS 250 C P+ W E V + +SC HW P P A G+ DS Sbjct: 905 CPEPQDEKEWERAVPLIAATESVPQPESCISHWTPP--PAAVGSTGSDS 951
>TERM_ADE07 (P03270) DNA terminal protein (Bellett protein) (pTP protein)| Length = 640 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 Query: 308 VEKCLADYGVDRPTMGDVLWNLEFVLQLQEAGP 210 VE+ + DY D D W + L++Q+AGP Sbjct: 173 VERLMQDYYKDLARCQDDAWGMAHRLRIQQAGP 205
>ANX11_MOUSE (P97384) Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50)| (CAP-50) Length = 503 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +2 Query: 209 PGRPPAAGAQTPDSTGHHPW*G 274 PG PP AG P + G PW G Sbjct: 4 PGYPPPAGGYPPAAPGGGPWGG 25 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,987,917 Number of Sequences: 219361 Number of extensions: 1155123 Number of successful extensions: 3740 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3606 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3735 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
