Clone Name | rbastl16b04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 174 bits (88), Expect = 1e-40 Identities = 214/256 (83%) Strand = Plus / Minus Query: 38 ttcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagt 97 ||||||||||||| ||||| |||||||| |||||||||| |||| ||||||||||||| Sbjct: 35484 ttcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagt 35425 Query: 98 aatccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctgg 157 | |||||| || ||||||| ||||| |||| |||||||| |||| ||||| || Sbjct: 35424 agtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctggg 35365 Query: 158 tgtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccgg 217 | | ||| ||||||||||||||||||||||| |||| ||||| | ||||||||| | Sbjct: 35364 catttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctg 35305 Query: 218 cctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggt 277 |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || | Sbjct: 35304 cctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgtt 35245 Query: 278 caacgccgtaatccgc 293 | |||||||| ||||| Sbjct: 35244 cgacgccgtactccgc 35229
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 174 bits (88), Expect = 1e-40 Identities = 214/256 (83%) Strand = Plus / Minus Query: 38 ttcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagt 97 ||||||||||||| ||||| |||||||| |||||||||| |||| ||||||||||||| Sbjct: 3613137 ttcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagt 3613078 Query: 98 aatccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctgg 157 | |||||| || ||||||| ||||| |||| |||||||| |||| ||||| || Sbjct: 3613077 agtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctggg 3613018 Query: 158 tgtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccgg 217 | | ||| ||||||||||||||||||||||| |||| ||||| | ||||||||| | Sbjct: 3613017 catttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctg 3612958 Query: 218 cctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggt 277 |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || | Sbjct: 3612957 cctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgtt 3612898 Query: 278 caacgccgtaatccgc 293 | |||||||| ||||| Sbjct: 3612897 cgacgccgtactccgc 3612882 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 219 ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 268 |||||||||||||||| ||||||| || ||||| || ||||||||||||| Sbjct: 14662600 ctcctgcagctggagcgcaaactcgaggttccagagcacatcacccatgg 14662649 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 219 ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 268 |||||||||||| || ||| ||| || |||||||||||||||||||||| Sbjct: 14651679 ctcctgcagctgtagtgcaacctcgaggttccacaggacatcacccatgg 14651728
>dbj|AK067124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098L04, full insert sequence Length = 1216 Score = 174 bits (88), Expect = 1e-40 Identities = 214/256 (83%) Strand = Plus / Minus Query: 38 ttcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagt 97 ||||||||||||| ||||| |||||||| |||||||||| |||| ||||||||||||| Sbjct: 998 ttcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagt 939 Query: 98 aatccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctgg 157 | |||||| || ||||||| ||||| |||| |||||||| |||| ||||| || Sbjct: 938 agtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctggg 879 Query: 158 tgtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccgg 217 | | ||| ||||||||||||||||||||||| |||| ||||| | ||||||||| | Sbjct: 878 catttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctg 819 Query: 218 cctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggt 277 |||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || | Sbjct: 818 cctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgtt 759 Query: 278 caacgccgtaatccgc 293 | |||||||| ||||| Sbjct: 758 cgacgccgtactccgc 743
>ref|XM_475640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2529 Score = 172 bits (87), Expect = 4e-40 Identities = 213/255 (83%) Strand = Plus / Minus Query: 39 tcacctcccttcagtgttcatcagctgcgagaaggcatcgttggtcgacatctgagagta 98 |||||||||||| ||||| |||||||| |||||||||| |||| |||||||||||||| Sbjct: 2529 tcacctcccttctgtgttgatcagctgtgagaaggcattactggttgacatctgagagta 2470 Query: 99 atccatgtttgtggggctttcgtctgcggtgccaatctccagagagcccatccttctggt 158 |||||| || ||||||| ||||| |||| |||||||| |||| ||||| || Sbjct: 2469 gtccatggccgttcggctttcatctgcagtgctgatctccagggagcttatcctctgggc 2410 Query: 159 gtccggaggaagttcagagatctgattcatgctgtcaacattggagacgtccgggccggc 218 | | ||| ||||||||||||||||||||||| |||| ||||| | ||||||||| || Sbjct: 2409 atttgaagggagttcagagatctgattcatgctatcaatgttggacatgtccgggcctgc 2350 Query: 219 ctcctgcagctggagcacaaactccagattccacaggacatcacccatggtagggcggtc 278 ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || || Sbjct: 2349 ctcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttc 2290 Query: 279 aacgccgtaatccgc 293 |||||||| ||||| Sbjct: 2289 gacgccgtactccgc 2275
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 95.6 bits (48), Expect = 8e-17 Identities = 90/104 (86%) Strand = Plus / Plus Query: 169 agttcagagatctgattcatgctgtcaacattggagacgtccgggccggcctcctgcagc 228 |||||||||||||||||||| ||||| | ||||| | ||| || || |||||||| ||| Sbjct: 43879 agttcagagatctgattcatactgtcgatgttggacatgtctggacctgcctcctgtagc 43938 Query: 229 tggagcacaaactccagattccacaggacatcacccatggtagg 272 || |||||||||||||| |||||||| ||||||||||| ||||| Sbjct: 43939 tgcagcacaaactccaggttccacagcacatcacccattgtagg 43982
>gb|BT024128.1| Zea mays clone EL01N0449F01 mRNA sequence Length = 1401 Score = 87.7 bits (44), Expect = 2e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 169 agttcagagatctgattcatgctgtcaacattggagacgtccgggccggcctcctgcagc 228 |||||||||||||||||||| |||| | ||||| | ||| || || |||||||||||| Sbjct: 1057 agttcagagatctgattcatactgttgatgttggacatgtctggacctgcctcctgcagc 998 Query: 229 tggagcacaaactccagattccacaggacatcacccatggtagg 272 || |||||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 997 tgcagcacaaactccaggttccacagcacatcccccatagtagg 954 Score = 48.1 bits (24), Expect = 0.017 Identities = 45/52 (86%) Strand = Plus / Minus Query: 23 aacaattctgtccagttcacctcccttcagtgttcatcagctgcgagaaggc 74 ||||||||| |||||||||||| ||||| | || || |||||||||||||| Sbjct: 1203 aacaattctatccagttcaccttccttctgcattgattagctgcgagaaggc 1152
>gb|AY110775.1| Zea mays CL12999_1 mRNA sequence Length = 625 Score = 77.8 bits (39), Expect = 2e-11 Identities = 78/91 (85%) Strand = Plus / Plus Query: 169 agttcagagatctgattcatgctgtcaacattggagacgtccgggccggcctcctgcagc 228 |||||||||||||||||||| |||| | ||||| | ||| || || |||||||||||| Sbjct: 330 agttcagagatctgattcatactgttgatgttggacatgtctggacctgcctcctgcagc 389 Query: 229 tggagcacaaactccagattccacaggacat 259 || |||||||||||||| |||||||| |||| Sbjct: 390 tgcagcacaaactccaggttccacagcacat 420 Score = 48.1 bits (24), Expect = 0.017 Identities = 45/52 (86%) Strand = Plus / Plus Query: 23 aacaattctgtccagttcacctcccttcagtgttcatcagctgcgagaaggc 74 ||||||||| |||||||||||| ||||| | || || |||||||||||||| Sbjct: 184 aacaattctatccagttcaccttccttctgcattgattagctgcgagaaggc 235
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 60.0 bits (30), Expect = 4e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 219 ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 268 |||||||||||||||| ||||||| || ||||| || ||||||||||||| Sbjct: 78894 ctcctgcagctggagcgcaaactcgaggttccagagcacatcacccatgg 78943 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 219 ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 268 |||||||||||| || ||| ||| || |||||||||||||||||||||| Sbjct: 67973 ctcctgcagctgtagtgcaacctcgaggttccacaggacatcacccatgg 68022
>dbj|AK099713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084B13, full insert sequence Length = 4389 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 219 ctcctgcagctggagcacaaactccagattccacaggacatcacccatgg 268 |||||||||||| || ||| ||| || |||||||||||||||||||||| Sbjct: 3947 ctcctgcagctgtagtgcaacctcgaggttccacaggacatcacccatgg 3898
>gb|AC149545.1| Populus trichocarpa clone Pop1-71J23, complete sequence Length = 103543 Score = 48.1 bits (24), Expect = 0.017 Identities = 30/32 (93%) Strand = Plus / Minus Query: 244 agattccacaggacatcacccatggtagggcg 275 ||||||||||| ||||||||||||| |||||| Sbjct: 45743 agattccacagcacatcacccatggaagggcg 45712
>gb|AF332888.1|AF332888 Solanum dulcamara serine/threonine protein kinase pseudogene, partial sequence Length = 1277 Score = 48.1 bits (24), Expect = 0.017 Identities = 27/28 (96%) Strand = Plus / Minus Query: 239 actccagattccacaggacatcacccat 266 |||||||||||||||| ||||||||||| Sbjct: 887 actccagattccacagcacatcacccat 860
>gb|AC126549.4| Mus musculus BAC clone RP24-326I12 from chromosome 13, complete sequence Length = 189739 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 4 gcttccttggtgacacagaaac 25 |||||||||||||||||||||| Sbjct: 110045 gcttccttggtgacacagaaac 110066
>gb|BT016560.1| Zea mays clone Contig393 mRNA sequence Length = 747 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ggccggcctcctgcagctgga 232 ||||||||||||||||||||| Sbjct: 201 ggccggcctcctgcagctgga 181
>emb|AL136084.11| Human DNA sequence from clone RP11-92C4 on chromosome 9q22.33-31.3 Contains the GALNT12 gene for UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12), the 5' end of the COL15A1 gene for collagen type XV, alpha 1, a novel gene, a non-metastatic cells 2, protein (NM23B) expressed in (NME2) pseudogene and a CpG island, complete sequence Length = 149930 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 21 gaaacaattctgtccagttcacctc 45 ||||||||||||||||| ||||||| Sbjct: 103585 gaaacaattctgtccagctcacctc 103561
>gb|AY107387.1| Zea mays PCO149313 mRNA sequence Length = 1336 Score = 42.1 bits (21), Expect = 1.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 238 aactccagattccacaggacatcacccatggtagggcggtc 278 |||||||| ||||| || ||||||||||| | ||||||||| Sbjct: 839 aactccaggttccagagcacatcacccatcgaagggcggtc 799
>gb|AY104547.1| Zea mays PCO113533 mRNA sequence Length = 927 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ggccggcctcctgcagctgga 232 ||||||||||||||||||||| Sbjct: 282 ggccggcctcctgcagctgga 262
>gb|AC159417.1| Trypanosoma brucei chromosome 8 clone RPCI93-25L8, complete sequence Length = 36265 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 11444 gagcacaaactccagcttccacag 11467 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 1017 gagcacaaactccagcttccacag 1040
>gb|AC159407.1| Trypanosoma brucei chromosome 8 clone RPCI93-12O16, complete sequence Length = 161249 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 159606 gagcacaaactccagcttccacag 159629 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 149179 gagcacaaactccagcttccacag 149202
>gb|AF220603.1| Lycopersicon esculentum VFNT Cherry Pto locus, complete sequence Length = 59202 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 44217 actccagtttccacagcacatcacccat 44244 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 26361 actccagtttccacagcacatcacccat 26388
>gb|AF220602.1| Lycopersicon pimpinellifolium Rio Grande 76R Pto locus, complete sequence Length = 60831 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 48503 actccagtttccacagcacatcacccat 48530 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 28125 actccagtttccacagcacatcacccat 28152
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 298326 gagcacaaactccagcttccacag 298349 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 287899 gagcacaaactccagcttccacag 287922
>ref|XM_423449.1| PREDICTED: Gallus gallus similar to ATP-binding cassette, sub-family B, member 6, mitochondrial precursor (Mitochondrial ABC transporter 3) (Mt-ABC transporter 3) (ABC transporter umat) (LOC425721), partial mRNA Length = 1437 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 cctcctgcagctggagcaca 237 |||||||||||||||||||| Sbjct: 351 cctcctgcagctggagcaca 370
>gb|AC149542.1| Populus trichocarpa clone Pop1-2C5, complete sequence Length = 146274 Score = 40.1 bits (20), Expect = 4.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 244 agattccacaggacatcacccatggtagggcg 275 ||||||||||| ||||||||||| | |||||| Sbjct: 112985 agattccacagcacatcacccatcgaagggcg 113016
>gb|AY386696.1| Oryctolagus cuniculus clone 27N5, complete sequence Length = 146676 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gggccggcctcctgcagctg 230 |||||||||||||||||||| Sbjct: 114412 gggccggcctcctgcagctg 114393 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 gggccggcctcctgcagctg 230 |||||||||||||||||||| Sbjct: 76614 gggccggcctcctgcagctg 76595
>ref|XM_818508.1| Trypanosoma brucei TREU927 clone RPCI93-12O16 hypothetical protein (Tb927.8.930) partial mRNA Length = 1413 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 609 gagcacaaactccagcttccacag 586
>ref|XM_818816.1| Trypanosoma brucei TREU927 clone RPCI93-25L8 hypothetical protein (Tb927.8.950) partial mRNA Length = 1413 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 231 gagcacaaactccagattccacag 254 ||||||||||||||| |||||||| Sbjct: 609 gagcacaaactccagcttccacag 586
>gb|AC116575.4| Mus musculus BAC clone RP23-263I24 from 9, complete sequence Length = 208678 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 gctggagcacaaactccaga 246 |||||||||||||||||||| Sbjct: 41093 gctggagcacaaactccaga 41112
>gb|AC102044.7| Mus musculus chromosome 9, clone RP23-303N8, complete sequence Length = 210347 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 gctggagcacaaactccaga 246 |||||||||||||||||||| Sbjct: 13409 gctggagcacaaactccaga 13390
>gb|AY316967.1| Capsicum chinense clone CchiPto9 Pto-like serine/threonine kinase-like mRNA, partial sequence Length = 1237 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 actccagattccacaggacatcacccat 266 |||||||| ||||||| ||||||||||| Sbjct: 886 actccagactccacagtacatcacccat 859
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 agaaggcatcgttggtcgac 87 |||||||||||||||||||| Sbjct: 1780378 agaaggcatcgttggtcgac 1780359
>gb|AC026512.6| Homo sapiens chromosome 15, clone RP11-375D9, complete sequence Length = 90707 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 gacatcacccatggtagggc 274 |||||||||||||||||||| Sbjct: 41732 gacatcacccatggtagggc 41751
>gb|AF318493.1|AF318493 Lycopersicon hirsutum Pto-like protein kinase D (LhirPtoD) mRNA, complete cds Length = 972 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 925 actccagtttccacagcacatcacccat 898
>gb|AF318492.1|AF318492 Lycopersicon hirsutum Pto-like protein kinase B (LhirPtoB) mRNA, complete cds Length = 963 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 916 actccagtttccacagcacatcacccat 889
>gb|U13923.1|LEU13923 Lycopersicon pimpinellifolium serine/threonine protein kinase (Fen) mRNA, complete cds Length = 957 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 910 actccagtttccacagcacatcacccat 883
>gb|U59317.1|LPU59317 Lycopersicon pimpinellifolium serine/threonine protein kinase Fen (Fen) gene, complete cds Length = 1481 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 1167 actccagtttccacagcacatcacccat 1140
>gb|U59318.1|LEU59318 Lycopersicon esculentum serine/threonine protein kinase fen (fen) gene, complete cds Length = 1478 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 239 actccagattccacaggacatcacccat 266 ||||||| |||||||| ||||||||||| Sbjct: 1175 actccagtttccacagcacatcacccat 1148 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,430,404 Number of Sequences: 3902068 Number of extensions: 2430404 Number of successful extensions: 47348 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47242 Number of HSP's gapped (non-prelim): 104 length of query: 312 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 290 effective length of database: 17,147,199,772 effective search space: 4972687933880 effective search space used: 4972687933880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)