Clone Name | rbastl16b02 |
---|---|
Clone Library Name | barley_pub |
>gb|BC085132.1| Mus musculus solute carrier family 5 (sodium-dependent vitamin transporter), member 6, mRNA (cDNA clone MGC:109689 IMAGE:6416422), complete cds Length = 3051 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 953 acatctgtccagatgacagcctt 931
>ref|NM_130746.1| Rattus norvegicus solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (Slc5a6), mRNA Length = 3091 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 1020 acatctgtccagatgacagcctt 998
>ref|NM_177870.2| Mus musculus solute carrier family 5 (sodium-dependent vitamin transporter), member 6 (Slc5a6), mRNA Length = 3124 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 1056 acatctgtccagatgacagcctt 1034
>gb|AY572835.1| Mus musculus sodium dependent multivitamin transporter mRNA, complete cds Length = 1905 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 608 acatctgtccagatgacagcctt 586
>gb|BC065061.1| Mus musculus solute carrier family 5 (sodium-dependent vitamin transporter), member 6, mRNA (cDNA clone IMAGE:6416028), containing frame-shift errors Length = 3261 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 1150 acatctgtccagatgacagcctt 1128
>dbj|AK158896.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K430360E18 product:solute carrier family 5 (sodium-dependent vitamin transporter), member 6, full insert sequence Length = 3437 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 1369 acatctgtccagatgacagcctt 1347
>dbj|AK161633.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730414F09 product:solute carrier family 5 (sodium-dependent vitamin transporter), member 6, full insert sequence Length = 3249 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 1181 acatctgtccagatgacagcctt 1159
>dbj|AK088682.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430023I20 product:SODIUM-DEPENDENT MULTIVITAMIN TRANSPORTER (NA(+)-DEPENDENT MULTIVITAMIN TRANSPORTER) homolog [Rattus norvegicus], full insert sequence Length = 3124 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 1056 acatctgtccagatgacagcctt 1034
>gb|AC156284.8| Mus musculus 6 BAC RP24-392D13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 182146 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 77912 acatctgtccagatgacagcctt 77934
>gb|AC153855.4| Mus musculus 6 BAC RP23-175B24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183070 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Plus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 67160 acatctgtccagatgacagcctt 67182
>gb|AF081204.2|AF081204 Rattus norvegicus small intestine sodium dependent multivitamin transporter (SMVT) mRNA, complete cds Length = 2678 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 608 acatctgtccagatgacagcctt 586
>gb|AC109608.14| Mus musculus strain C57BL/6J chromosome 5 clone rp23-154k6, complete sequence Length = 216195 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 118235 acatctgtccagatgacagcctt 118213
>gb|AF081205.1|AF081205 Rattus norvegicus kidney sodium dependent multivitamin transporter (SMVT) mRNA, complete cds Length = 1905 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 608 acatctgtccagatgacagcctt 586
>gb|AF026554.1|AF026554 Rattus norvegicus sodium-dependent multi-vitamin transporter (SMVT) mRNA, complete cds Length = 3091 Score = 46.1 bits (23), Expect = 0.090 Identities = 23/23 (100%) Strand = Plus / Minus Query: 214 acatctgtccagatgacagcctt 236 ||||||||||||||||||||||| Sbjct: 1020 acatctgtccagatgacagcctt 998
>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0066E19, complete sequence Length = 145575 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 tcatacatggcaatatggcata 59 |||||||||||||||||||||| Sbjct: 112076 tcatacatggcaatatggcata 112055
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 tcatacatggcaatatggcata 59 |||||||||||||||||||||| Sbjct: 18713653 tcatacatggcaatatggcata 18713632
>dbj|AK065979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047J08, full insert sequence Length = 3156 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 tcatacatggcaatatggcata 59 |||||||||||||||||||||| Sbjct: 2935 tcatacatggcaatatggcata 2956
>gb|AC147887.2| Xenopus tropicalis clone CH216-147L5, complete sequence Length = 176251 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 gatcaggtttcaaaatgaaaa 155 ||||||||||||||||||||| Sbjct: 17483 gatcaggtttcaaaatgaaaa 17503
>emb|AL359755.9| Human DNA sequence from clone RP13-104H2 on chromosome X Contains voltage-dependent anion channel 1-like pseudogene (VDAC1LP), complete sequence Length = 91026 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 tacaacagcaaaccagtcata 42 ||||||||||||||||||||| Sbjct: 90713 tacaacagcaaaccagtcata 90733
>gb|AC137831.27| Medicago truncatula clone mth2-34o21, complete sequence Length = 117693 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 atacatggcaatatggcata 59 |||||||||||||||||||| Sbjct: 21832 atacatggcaatatggcata 21851
>emb|BX890600.8| Zebrafish DNA sequence from clone DKEY-72L21, complete sequence Length = 200995 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 gtctacaacagcaaaccagt 38 |||||||||||||||||||| Sbjct: 89939 gtctacaacagcaaaccagt 89958
>gb|AC159129.4| Mus musculus BAC clone RP23-472N21 from chromosome 6, complete sequence Length = 181390 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 agatcaggtttcaaaatgaaaatg 157 ||||||||||| |||||||||||| Sbjct: 13764 agatcaggttttaaaatgaaaatg 13787
>gb|AC124758.6| Mus musculus BAC clone RP23-123I10 from chromosome 6, complete sequence Length = 216956 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 agatcaggtttcaaaatgaaaatg 157 ||||||||||| |||||||||||| Sbjct: 53459 agatcaggttttaaaatgaaaatg 53436 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,438,206 Number of Sequences: 3902068 Number of extensions: 3438206 Number of successful extensions: 62245 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62193 Number of HSP's gapped (non-prelim): 52 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)