ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC085132.1| Mus musculus solute carrier family 5 (sodium-depe... 46 0.090
2ref|NM_130746.1| Rattus norvegicus solute carrier family 5 (sodi... 46 0.090
3ref|NM_177870.2| Mus musculus solute carrier family 5 (sodium-de... 46 0.090
4gb|AY572835.1| Mus musculus sodium dependent multivitamin transp... 46 0.090
5gb|BC065061.1| Mus musculus solute carrier family 5 (sodium-depe... 46 0.090
6dbj|AK158896.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 46 0.090
7dbj|AK161633.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 46 0.090
8dbj|AK088682.1| Mus musculus 2 days neonate thymus thymic cells ... 46 0.090
9gb|AC156284.8| Mus musculus 6 BAC RP24-392D13 (Roswell Park Canc... 46 0.090
10gb|AC153855.4| Mus musculus 6 BAC RP23-175B24 (Roswell Park Canc... 46 0.090
11gb|AF081204.2|AF081204 Rattus norvegicus small intestine sodium ... 46 0.090
12gb|AC109608.14| Mus musculus strain C57BL/6J chromosome 5 clone ... 46 0.090
13gb|AF081205.1|AF081205 Rattus norvegicus kidney sodium dependent... 46 0.090
14gb|AF026554.1|AF026554 Rattus norvegicus sodium-dependent multi-... 46 0.090
15gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.36
16dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
17dbj|AK065979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
18gb|AC147887.2| Xenopus tropicalis clone CH216-147L5, complete se... 42 1.4
19emb|AL359755.9| Human DNA sequence from clone RP13-104H2 on chro... 42 1.4
20gb|AC137831.27| Medicago truncatula clone mth2-34o21, complete s... 40 5.6
21emb|BX890600.8| Zebrafish DNA sequence from clone DKEY-72L21, co... 40 5.6
22gb|AC159129.4| Mus musculus BAC clone RP23-472N21 from chromosom... 40 5.6
23gb|AC124758.6| Mus musculus BAC clone RP23-123I10 from chromosom... 40 5.6

>gb|BC085132.1| Mus musculus solute carrier family 5 (sodium-dependent vitamin
           transporter), member 6, mRNA (cDNA clone MGC:109689
           IMAGE:6416422), complete cds
          Length = 3051

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 214 acatctgtccagatgacagcctt 236
           |||||||||||||||||||||||
Sbjct: 953 acatctgtccagatgacagcctt 931



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>ref|NM_130746.1| Rattus norvegicus solute carrier family 5 (sodium-dependent vitamin
            transporter), member 6 (Slc5a6), mRNA
          Length = 3091

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 214  acatctgtccagatgacagcctt 236
            |||||||||||||||||||||||
Sbjct: 1020 acatctgtccagatgacagcctt 998



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>ref|NM_177870.2| Mus musculus solute carrier family 5 (sodium-dependent vitamin
            transporter), member 6 (Slc5a6), mRNA
          Length = 3124

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 214  acatctgtccagatgacagcctt 236
            |||||||||||||||||||||||
Sbjct: 1056 acatctgtccagatgacagcctt 1034



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>gb|AY572835.1| Mus musculus sodium dependent multivitamin transporter mRNA,
           complete cds
          Length = 1905

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 214 acatctgtccagatgacagcctt 236
           |||||||||||||||||||||||
Sbjct: 608 acatctgtccagatgacagcctt 586



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>gb|BC065061.1| Mus musculus solute carrier family 5 (sodium-dependent vitamin
            transporter), member 6, mRNA (cDNA clone IMAGE:6416028),
            containing frame-shift errors
          Length = 3261

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 214  acatctgtccagatgacagcctt 236
            |||||||||||||||||||||||
Sbjct: 1150 acatctgtccagatgacagcctt 1128



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>dbj|AK158896.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K430360E18 product:solute carrier family 5
            (sodium-dependent vitamin transporter), member 6, full
            insert sequence
          Length = 3437

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 214  acatctgtccagatgacagcctt 236
            |||||||||||||||||||||||
Sbjct: 1369 acatctgtccagatgacagcctt 1347



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>dbj|AK161633.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730414F09 product:solute carrier
            family 5 (sodium-dependent vitamin transporter), member
            6, full insert sequence
          Length = 3249

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 214  acatctgtccagatgacagcctt 236
            |||||||||||||||||||||||
Sbjct: 1181 acatctgtccagatgacagcctt 1159



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>dbj|AK088682.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430023I20
            product:SODIUM-DEPENDENT MULTIVITAMIN TRANSPORTER
            (NA(+)-DEPENDENT MULTIVITAMIN TRANSPORTER) homolog
            [Rattus norvegicus], full insert sequence
          Length = 3124

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 214  acatctgtccagatgacagcctt 236
            |||||||||||||||||||||||
Sbjct: 1056 acatctgtccagatgacagcctt 1034



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>gb|AC156284.8| Mus musculus 6 BAC RP24-392D13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 182146

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 214   acatctgtccagatgacagcctt 236
             |||||||||||||||||||||||
Sbjct: 77912 acatctgtccagatgacagcctt 77934



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>gb|AC153855.4| Mus musculus 6 BAC RP23-175B24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 183070

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 214   acatctgtccagatgacagcctt 236
             |||||||||||||||||||||||
Sbjct: 67160 acatctgtccagatgacagcctt 67182



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>gb|AF081204.2|AF081204 Rattus norvegicus small intestine sodium dependent multivitamin
           transporter (SMVT) mRNA, complete cds
          Length = 2678

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 214 acatctgtccagatgacagcctt 236
           |||||||||||||||||||||||
Sbjct: 608 acatctgtccagatgacagcctt 586



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>gb|AC109608.14| Mus musculus strain C57BL/6J chromosome 5 clone rp23-154k6, complete
              sequence
          Length = 216195

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 214    acatctgtccagatgacagcctt 236
              |||||||||||||||||||||||
Sbjct: 118235 acatctgtccagatgacagcctt 118213



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>gb|AF081205.1|AF081205 Rattus norvegicus kidney sodium dependent multivitamin transporter
           (SMVT) mRNA, complete cds
          Length = 1905

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 214 acatctgtccagatgacagcctt 236
           |||||||||||||||||||||||
Sbjct: 608 acatctgtccagatgacagcctt 586



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>gb|AF026554.1|AF026554 Rattus norvegicus sodium-dependent multi-vitamin transporter (SMVT)
            mRNA, complete cds
          Length = 3091

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 214  acatctgtccagatgacagcctt 236
            |||||||||||||||||||||||
Sbjct: 1020 acatctgtccagatgacagcctt 998



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>gb|AC108758.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0066E19, complete sequence
          Length = 145575

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 38     tcatacatggcaatatggcata 59
              ||||||||||||||||||||||
Sbjct: 112076 tcatacatggcaatatggcata 112055



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 38       tcatacatggcaatatggcata 59
                ||||||||||||||||||||||
Sbjct: 18713653 tcatacatggcaatatggcata 18713632



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>dbj|AK065979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047J08, full
            insert sequence
          Length = 3156

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 38   tcatacatggcaatatggcata 59
            ||||||||||||||||||||||
Sbjct: 2935 tcatacatggcaatatggcata 2956



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>gb|AC147887.2| Xenopus tropicalis clone CH216-147L5, complete sequence
          Length = 176251

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 135   gatcaggtttcaaaatgaaaa 155
             |||||||||||||||||||||
Sbjct: 17483 gatcaggtttcaaaatgaaaa 17503



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>emb|AL359755.9| Human DNA sequence from clone RP13-104H2 on chromosome X Contains
             voltage-dependent anion channel 1-like pseudogene
             (VDAC1LP), complete sequence
          Length = 91026

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    tacaacagcaaaccagtcata 42
             |||||||||||||||||||||
Sbjct: 90713 tacaacagcaaaccagtcata 90733



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>gb|AC137831.27| Medicago truncatula clone mth2-34o21, complete sequence
          Length = 117693

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    atacatggcaatatggcata 59
             ||||||||||||||||||||
Sbjct: 21832 atacatggcaatatggcata 21851



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>emb|BX890600.8| Zebrafish DNA sequence from clone DKEY-72L21, complete sequence
          Length = 200995

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    gtctacaacagcaaaccagt 38
             ||||||||||||||||||||
Sbjct: 89939 gtctacaacagcaaaccagt 89958



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>gb|AC159129.4| Mus musculus BAC clone RP23-472N21 from chromosome 6, complete sequence
          Length = 181390

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 134   agatcaggtttcaaaatgaaaatg 157
             ||||||||||| ||||||||||||
Sbjct: 13764 agatcaggttttaaaatgaaaatg 13787



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>gb|AC124758.6| Mus musculus BAC clone RP23-123I10 from chromosome 6, complete sequence
          Length = 216956

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 134   agatcaggtttcaaaatgaaaatg 157
             ||||||||||| ||||||||||||
Sbjct: 53459 agatcaggttttaaaatgaaaatg 53436


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,438,206
Number of Sequences: 3902068
Number of extensions: 3438206
Number of successful extensions: 62245
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62193
Number of HSP's gapped (non-prelim): 52
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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