Clone Name | rbastl16a12 |
---|---|
Clone Library Name | barley_pub |
>emb|BX323012.5| Zebrafish DNA sequence from clone DKEYP-46F3, complete sequence Length = 175238 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 317 gaaataattgtaacccttcatcattttcag 346 |||||||||||| ||||| ||||||||||| Sbjct: 48959 gaaataattgtatcccttgatcattttcag 48988
>gb|AC147680.4| Canis Familiaris, clone XX-10H12, complete sequence Length = 214979 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 131 atacaatgactgaaatgcaaa 151 ||||||||||||||||||||| Sbjct: 153729 atacaatgactgaaatgcaaa 153709
>gb|AC103939.8| Mus musculus chromosome 18, clone RP23-300E7, complete sequence Length = 240406 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 tcacacaaatacaatgactga 143 ||||||||||||||||||||| Sbjct: 233161 tcacacaaatacaatgactga 233141
>gb|AC152827.4| Mus musculus BAC clone RP23-60K23 from chromosome 12, complete sequence Length = 195066 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 ccatcatcacacaaatacaat 137 ||||||||||||||||||||| Sbjct: 111070 ccatcatcacacaaatacaat 111050
>gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, complete sequence Length = 190380 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 tcacacaaatacaatgactga 143 ||||||||||||||||||||| Sbjct: 47730 tcacacaaatacaatgactga 47710
>emb|AL596265.12| Mouse DNA sequence from clone RP23-134O19 on chromosome 12, complete sequence Length = 205332 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ccatcatcacacaaatacaat 137 ||||||||||||||||||||| Sbjct: 195464 ccatcatcacacaaatacaat 195484
>gb|AC132240.3| Mus musculus BAC clone RP24-411A22 from 3, complete sequence Length = 182978 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 atgtctagagggttcaacatc 197 ||||||||||||||||||||| Sbjct: 155626 atgtctagagggttcaacatc 155646
>gb|AC103624.9| Mus musculus chromosome 5, clone RP24-258B22, complete sequence Length = 172330 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 catctccagtgccagatgat 213 |||||||||||||||||||| Sbjct: 164777 catctccagtgccagatgat 164758
>gb|AC152353.1| Pan troglodytes chromosome X clone RP43-001P01 map human ortholog p22.31, complete sequence Length = 218326 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 aaatgcaaacagagaattaaagaagagt 170 ||||||||| ||| |||||||||||||| Sbjct: 30835 aaatgcaaaaagaaaattaaagaagagt 30808
>gb|AC166972.8| Mus musculus chromosome 3, clone RP24-330F18, complete sequence Length = 142975 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 aaatgcaaacagagaattaa 162 |||||||||||||||||||| Sbjct: 43356 aaatgcaaacagagaattaa 43375
>gb|AC161226.7| Mus musculus chromosome 3, clone RP23-298B8, complete sequence Length = 200107 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 aaatgcaaacagagaattaa 162 |||||||||||||||||||| Sbjct: 15809 aaatgcaaacagagaattaa 15828
>ref|XM_367742.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07653.4) partial mRNA Length = 834 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gaggctgcttgccagcgcaa 437 |||||||||||||||||||| Sbjct: 48 gaggctgcttgccagcgcaa 29
>gb|AC158301.4| Mus musculus chromosome 5, clone RP24-71D19, complete sequence Length = 234479 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 cttgcttttggtttcgagtgtatc 297 ||||||||| |||||||||||||| Sbjct: 93212 cttgctttttgtttcgagtgtatc 93235
>gb|AC074034.19| Homo sapiens Xp BAC RP11-143E20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111461 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 143 aaatgcaaacagagaattaaagaagagt 170 ||||||||| ||| |||||||||||||| Sbjct: 42168 aaatgcaaaaagaaaattaaagaagagt 42141
>gb|AC135110.3| Mus musculus BAC clone RP23-392G14 from chromosome 18, complete sequence Length = 182942 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gccatgctcttgaaaacacc 391 |||||||||||||||||||| Sbjct: 32904 gccatgctcttgaaaacacc 32885
>gb|AC141639.3| Mus musculus BAC clone RP23-354J7 from chromosome 18, complete sequence Length = 216358 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gaaacgaagacaataaatac 61 |||||||||||||||||||| Sbjct: 98606 gaaacgaagacaataaatac 98625
>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE Length = 243542 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ttgcttttggtttcgagtgt 294 |||||||||||||||||||| Sbjct: 130489 ttgcttttggtttcgagtgt 130470
>gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosome 8, complete sequence Length = 174928 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ctgcagccgtgctgctcaag 247 |||||||||||||||||||| Sbjct: 13080 ctgcagccgtgctgctcaag 13061
>gb|AC003081.1| Homo sapiens BAC clone CTB-9H2 from 7, complete sequence Length = 149566 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 acacaaatacaatgactgaa 144 |||||||||||||||||||| Sbjct: 7497 acacaaatacaatgactgaa 7516
>emb|AL592444.18| Human DNA sequence from clone RP11-178P20 on chromosome 6 Contains the 5' end of the TCP10 gene for t-complex 10 (mouse) and a CpG island, complete sequence Length = 74279 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 actgaaatgcaaacagagaa 158 |||||||||||||||||||| Sbjct: 37968 actgaaatgcaaacagagaa 37987
>gb|AC159460.9| Mus musculus chromosome 15, clone RP24-306N20, complete sequence Length = 184875 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aatgactgaaatgcaaacag 154 |||||||||||||||||||| Sbjct: 88941 aatgactgaaatgcaaacag 88922
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 gtcagccatgctcttgaaaa 387 |||||||||||||||||||| Sbjct: 1457737 gtcagccatgctcttgaaaa 1457718
>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence Length = 168708 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ttcaacatctccagtgccag 208 |||||||||||||||||||| Sbjct: 8547 ttcaacatctccagtgccag 8566
>gb|DQ393814.1| Saccharomyces cerevisiae isolate UCD935 methionine synthase (MET6) gene, complete cds Length = 2862 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 599 caaacagagaattaaagaag 618
>gb|DQ393813.1| Saccharomyces cerevisiae isolate UCD934 methionine synthase (MET6) gene, complete cds Length = 2862 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 599 caaacagagaattaaagaag 618
>gb|DQ393812.1| Saccharomyces cerevisiae isolate UCD940 methionine synthase (MET6) gene, complete cds Length = 2862 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 599 caaacagagaattaaagaag 618
>gb|DQ393811.1| Saccharomyces cerevisiae isolate UCD939 methionine synthase (MET6) gene, complete cds Length = 2862 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 599 caaacagagaattaaagaag 618
>gb|DQ393810.1| Saccharomyces cerevisiae isolate UCD932 methionine synthase (MET6) gene, complete cds Length = 2862 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 599 caaacagagaattaaagaag 618
>gb|AC008840.5| Homo sapiens chromosome 5 clone CTD-2154I11, complete sequence Length = 126746 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ttcaacatctccagtgccag 208 |||||||||||||||||||| Sbjct: 111991 ttcaacatctccagtgccag 112010
>gb|AC117725.23| Mus musculus chromosome 5, clone RP24-439K18, complete sequence Length = 180960 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 274 cttgcttttggtttcgagtgtatc 297 ||||||||| |||||||||||||| Sbjct: 171110 cttgctttttgtttcgagtgtatc 171133
>gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3, complete sequence Length = 160770 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ttcaacatctccagtgccag 208 |||||||||||||||||||| Sbjct: 22749 ttcaacatctccagtgccag 22730
>gb|U18839.1|SCE9747 Saccharomyces cerevisiae chromosome V cosmids 9747, 8198, 9781, and lambda clones 3612 and 6052 Length = 64797 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 32110 caaacagagaattaaagaag 32091
>gb|AC103893.2| Papio anubis clone RP41-216H1, complete sequence Length = 155255 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 56 aaatactagtacatgattattcagagca 83 ||||||| |||||||| ||||||||||| Sbjct: 114144 aaatacttgtacatgactattcagagca 114171
>gb|AC007767.3|F5D14 Sequence of BAC F5D14 from Arabidopsis thaliana chromosome 1, complete sequence Length = 127462 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aaatactagtacatgattat 75 |||||||||||||||||||| Sbjct: 85289 aaatactagtacatgattat 85308
>gb|AC145965.4| Pan troglodytes BAC clone clone RP43-12H8 from 7, complete sequence Length = 201762 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 acacaaatacaatgactgaa 144 |||||||||||||||||||| Sbjct: 125903 acacaaatacaatgactgaa 125922
>emb|X07238.1|SCDP8 Yeast delta-P8 gene promoter and 5' region Length = 1845 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 426 caaacagagaattaaagaag 445
>dbj|D13798.1|SYNP8GSH Unidentified cloning vector pGSR1518-4d DNA, promoter region Length = 1890 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 431 caaacagagaattaaagaag 450
>gb|AC174722.2| Mus musculus chromosome 5, clone wi1-1220K19, complete sequence Length = 33943 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 catctccagtgccagatgat 213 |||||||||||||||||||| Sbjct: 33263 catctccagtgccagatgat 33282
>gb|DQ331679.1| Synthetic construct Saccharomyces cerevisiae clone FLH202663.01X MET6 gene, complete sequence Length = 2304 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 41 caaacagagaattaaagaag 60
>gb|AC003691.1|AC003691 Human Chromosome 11q23 PAC clone pDJ254e13, complete sequence Length = 65020 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ttcaacatctccagtgccag 208 |||||||||||||||||||| Sbjct: 36453 ttcaacatctccagtgccag 36472
>gb|U32508.1|SCU32508 Saccharomyces cerevisiae N5-methyltetrahydrofolate homocysteine methyltransferase (MET6) gene and aspartyl protease gene, complete cds Length = 5163 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 2588 caaacagagaattaaagaag 2607
>gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, complete sequence Length = 178620 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ctgcagccgtgctgctcaag 247 |||||||||||||||||||| Sbjct: 148113 ctgcagccgtgctgctcaag 148094
>gb|U15099.1|SCU15099 Saccharomyces cerevisiae cobalamin-independent methionine synthase (MET6) gene, complete cds Length = 2986 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 caaacagagaattaaagaag 167 |||||||||||||||||||| Sbjct: 562 caaacagagaattaaagaag 581
>dbj|AB027295.1| Physarum polycephalum mitochondrial DNA, complete genome Length = 62862 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 aagacaataaatactagtacatga 71 ||||||||||||||||||| |||| Sbjct: 44397 aagacaataaatactagtatatga 44420 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,041,136 Number of Sequences: 3902068 Number of extensions: 4041136 Number of successful extensions: 75734 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75655 Number of HSP's gapped (non-prelim): 79 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)