>YOR3_LORDV (P54636) Hypothetical 28.5 kDa protein in coat protein gene|
           3'region (ORF3)
          Length = 268

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +1

Query: 40  MNKKTEPSNHRILTSTSLRMKTLLVTSVYTEDLNMAQSQAECTERASHPKPKWRGVFLIQ 219
           +N+K E  N+R L   S +  + L  + +  D  M Q+Q E T++      K +   L++
Sbjct: 29  INQKVEFENNRKLQQASFQFSSTLQQASFQHDKEMLQAQIEATQKLQQDLMKVKQAVLLE 88

>Y2R2_DROME (P16425) Putative 115 kDa protein in type-1 retrotransposable element|
            R1DM (Putative 115 kDa protein in type I
            retrotransposable element R1DM) (ORF 2)
          Length = 1021

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +3

Query: 39   DEQENRTIEPSHPYEHITPHENSFG-----NFSLHGRS*HGSVTSRVHGESITSKAKMAG 203
            D +  R      PY  +   + SFG     +F L G   HGS  + +HG +++     A 
Sbjct: 901  DSEPGRVTHRFIPYVTLAYRDPSFGFSMRTSFLLTG---HGSFNAFLHGRALSDTTACAC 957

Query: 204  GFPYTD 221
            G PY D
Sbjct: 958  GDPYED 963

>ANC1_HUMAN (Q9H1A4) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome|
           subunit 1) (Protein Tsg24) (Mitotic checkpoint
           regulator)
          Length = 1944

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -1

Query: 411 PGYGAPAVRPPNAMPRPSS*VDEV---KPLASVI 319
           PG  AP++   N MPRPS+ +D V   KPL+ ++
Sbjct: 512 PGLPAPSLTMSNTMPRPSTPLDGVSTPKPLSKLL 545

>ANC1_MOUSE (P53995) Anaphase-promoting complex subunit 1 (APC1) (Cyclosome|
           subunit 1) (Protein Tsg24) (Mitotic checkpoint
           regulator)
          Length = 1944

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -1

Query: 411 PGYGAPAVRPPNAMPRPSS*VDEV---KPLASVI 319
           PG  AP++   N MPRPS+ +D V   KPL+ ++
Sbjct: 512 PGLPAPSLTMSNMMPRPSTPLDGVGTPKPLSKLL 545

>GYRA_MYCLE (Q57532) DNA gyrase subunit A (EC 5.99.1.3) [Contains: Mle gyrA|
           intein]
          Length = 1273

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 171 ESITSKAKMAGGFPYTDHKRYAST-----RMLQQQHSLCLIGLRCASKRMWYTGRSL 326
           E++   A ++GGF + DH  + S       M+   +   + GLRC S R+  +G +L
Sbjct: 253 EALLFGAFISGGFVFQDHAGFNSLDRDYFTMVVNAYDTVVGGLRCISSRITVSGSTL 309

>GLGB_PROMA (Q7VBL4) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 755

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 6/90 (6%)
 Frame = +3

Query: 96  HENSFGNFSLHGRS*HGSVTSRVHGESITSKAKMAGGFPYTDHKRYASTRML------QQ 257
           H+N+   FS+        + S  H E +  K+ +    P  D K+YA+TR L        
Sbjct: 529 HQNNV-TFSICYNYTENFMLSLSHDEVVHGKSHLLHKMPGDDWKKYANTRALLAYMWTHP 587

Query: 258 QHSLCLIGLRCASKRMWYTGRSLRREVLPH 347
                 +G+    ++ W     L+ E+L H
Sbjct: 588 GKKTLFMGMEFGQRQEWNVWDDLQWELLEH 617

>ZNFX1_MOUSE (Q8R151) NFX1-type zinc finger-containing protein 1|
          Length = 1909

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 166  CTLLVTEPC*DLPCRLKLPKEFSCGVMC 83
            CT L +EPC   PC +   K  +CG  C
Sbjct: 1515 CTKLCSEPCNRPPCYVPCTKLLACGHPC 1542

>MURA2_LISMO (Q8Y4A2) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 (EC|
           2.5.1.7) (Enoylpyruvate transferase 2)
           (UDP-N-acetylglucosamine enolpyruvyl transferase 2) (EPT
           2)
          Length = 423

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 57  TIEPSHPYEHITPHENSFGNFSLHGRS*HGSVTSRVHGESITSKAKMAG 203
           TI PS  ++HI   E   G F L GRS   S  +++ G  +T+    AG
Sbjct: 326 TIYPSR-FKHIAELERMGGKFKLEGRSAVISGPAKLQGSKVTATDLRAG 373


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,341,116
Number of Sequences: 219361
Number of extensions: 1253562
Number of successful extensions: 3495
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3495
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)