ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC102156.16| Mus musculus chromosome 18, clone RP23-334L7, co... 42 1.2
2gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, co... 42 1.2
3gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, com... 42 1.2
4gb|AF106564.3| Homo sapiens chromosome 8 clone GS1-72M22 map p21... 40 4.9
5ref|XM_672554.1| Plasmodium berghei strain ANKA hypothetical pro... 40 4.9
6gb|AC109142.7| Mus musculus chromosome 8, clone RP23-168D5, comp... 40 4.9
7gb|AC021000.9| Homo sapiens chromosome 8, clone RP11-381I2, comp... 40 4.9
8gb|AC003077.1|AC003077 Human BAC clone GS1-34D21 from 7q31, comp... 40 4.9
9emb|BX640457.5| Zebrafish DNA sequence from clone DKEY-17A19 in ... 40 4.9
10gb|AC145946.3| Gallus gallus BAC clone CH261-23O21 from chromoso... 40 4.9

>gb|AC102156.16| Mus musculus chromosome 18, clone RP23-334L7, complete sequence
          Length = 221632

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    cttcaaatagcaccacaagct 46
             |||||||||||||||||||||
Sbjct: 17402 cttcaaatagcaccacaagct 17382



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>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence
          Length = 198984

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    cttcaaatagcaccacaagct 46
             |||||||||||||||||||||
Sbjct: 32373 cttcaaatagcaccacaagct 32393



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>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence
          Length = 194165

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 26     cttcaaatagcaccacaagct 46
              |||||||||||||||||||||
Sbjct: 154159 cttcaaatagcaccacaagct 154139



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>gb|AF106564.3| Homo sapiens chromosome 8 clone GS1-72M22 map p21.2, complete sequence
          Length = 143212

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   agcccaatgattcttaattt 323
             ||||||||||||||||||||
Sbjct: 36381 agcccaatgattcttaattt 36362



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>ref|XM_672554.1| Plasmodium berghei strain ANKA hypothetical protein (PB000206.00.0)
            partial mRNA
          Length = 3189

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   tgatcatgcaaattcttcaa 31
            ||||||||||||||||||||
Sbjct: 2760 tgatcatgcaaattcttcaa 2779



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>gb|AC109142.7| Mus musculus chromosome 8, clone RP23-168D5, complete sequence
          Length = 207544

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 307   ccaatgattcttaatttacc 326
             ||||||||||||||||||||
Sbjct: 28562 ccaatgattcttaatttacc 28581



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>gb|AC021000.9| Homo sapiens chromosome 8, clone RP11-381I2, complete sequence
          Length = 192592

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   agcccaatgattcttaattt 323
             ||||||||||||||||||||
Sbjct: 90287 agcccaatgattcttaattt 90268



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>gb|AC003077.1|AC003077 Human BAC clone GS1-34D21 from 7q31, complete sequence
          Length = 98387

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 11   gtgatcatgcaaattcttcaaata 34
            |||||||| |||||||||||||||
Sbjct: 1194 gtgatcattcaaattcttcaaata 1217



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>emb|BX640457.5| Zebrafish DNA sequence from clone DKEY-17A19 in linkage group 19,
             complete sequence
          Length = 36582

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ttctctaaccacggcgaccc 292
             ||||||||||||||||||||
Sbjct: 16005 ttctctaaccacggcgaccc 16024



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>gb|AC145946.3| Gallus gallus BAC clone CH261-23O21 from chromosome unknown, complete
             sequence
          Length = 248690

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 313   attcttaatttaccaaatca 332
             ||||||||||||||||||||
Sbjct: 41654 attcttaatttaccaaatca 41673


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,890,537
Number of Sequences: 3902068
Number of extensions: 2890537
Number of successful extensions: 49816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49803
Number of HSP's gapped (non-prelim): 13
length of query: 366
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 344
effective length of database: 17,147,199,772
effective search space: 5898636721568
effective search space used: 5898636721568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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