ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16a07 |
|---|---|
| Clone Library Name | barley_pub |
>TMPSD_MOUSE (Q5U405) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 543 Score = 32.3 bits (72), Expect = 0.29 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +3 Query: 117 DCKLKSHRGSKAPYDWEHQLIYITSWGADWEWKAILEQGIN*PSCSLTMQQL 272 DCK+KS +DW+ L+ + S G+ EW + N T QQL Sbjct: 192 DCKMKSDELGCVRFDWDKSLLKVYS-GSSGEWLPVCSSSWNDTDSKRTCQQL 242
>TMPSD_HUMAN (Q9BYE2) Transmembrane protease, serine 13 (EC 3.4.21.-) (Mosaic| serine protease) (Membrane-type mosaic serine protease) Length = 581 Score = 32.0 bits (71), Expect = 0.38 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = +3 Query: 117 DCKLKSHRGSKAPYDWEHQLIYITSWGADWEWKAILEQGIN*PSCSLTMQQL 272 DCKLKS +DW+ L+ I S G+ +W I N T QQL Sbjct: 211 DCKLKSDELGCVRFDWDKSLLKIYS-GSSHQWLPICSSNWNDSYSEKTCQQL 261
>MUTS_PELCD (Q3A4F1) DNA mismatch repair protein mutS| Length = 870 Score = 30.8 bits (68), Expect = 0.85 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -2 Query: 281 WCEQLLHGQRAGWLINPL 228 +CEQLL G WLINPL Sbjct: 182 FCEQLLQGASGSWLINPL 199
>VWF_PIG (Q28833) Von Willebrand factor precursor (vWF) (Fragment)| Length = 2482 Score = 28.5 bits (62), Expect = 4.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -1 Query: 87 ACAVTCIHDVTVRCPLC*MKTCHFASP 7 AC VTC H + CP+ ++ CH P Sbjct: 826 ACPVTCQHPEPLACPVSCVEGCHAHCP 852
>OSTA_VIBF1 (Q5E862) Organic solvent tolerance protein precursor| Length = 786 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 102 EHLTSDCKLKSHRGSKAPYDWEHQLIYITSWGADWEWKAI 221 E+L D K K +GS+ W+H IY W D E+ + Sbjct: 293 EYLNEDDKFKD-KGSRWGVSWDHSGIYQQHWKFDVEYSKV 331
>ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1| Length = 880 Score = 28.5 bits (62), Expect = 4.2 Identities = 25/101 (24%), Positives = 40/101 (39%) Frame = +1 Query: 22 TRLHLT*RTSYCYIMNTSYSTSSSICLNI*RQIAS*NHTAGAKLRMIGNIS*YTSHHGGQ 201 TR H + C+I N ++ SSS+ ++I HT L+ G+ Sbjct: 787 TRTHSGEKPYKCHICNKKFAISSSLKIHIR------THTGEKPLQC---------KICGK 831 Query: 202 TGNGKPSLSKGLISHPAR*PCSNCSHQLSSVADCQLQIWPC 324 N +LSK + +H + CS+CS + Q C Sbjct: 832 RFNESSNLSKHIKTHQKKYKCSDCSKSFDDLGKLNSQKVKC 872
>POLG_TMEVG (P08545) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2303 Score = 28.1 bits (61), Expect = 5.5 Identities = 20/54 (37%), Positives = 24/54 (44%) Frame = -1 Query: 210 IPSLPPMM*CILADVPNHTELCSRGVILTCNLTLDVQAY*TACAVTCIHDVTVR 49 IP P + C AD P L RGV+ TCN T V Y V ++D R Sbjct: 1455 IPGSKPQLACFSADCPL---LHKRGVMFTCNRTKTV--YNLQQVVKMVNDTITR 1503
>POLG_TMEVB (P08544) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2303 Score = 28.1 bits (61), Expect = 5.5 Identities = 20/54 (37%), Positives = 24/54 (44%) Frame = -1 Query: 210 IPSLPPMM*CILADVPNHTELCSRGVILTCNLTLDVQAY*TACAVTCIHDVTVR 49 IP P + C AD P L RGV+ TCN T V Y V ++D R Sbjct: 1455 IPGSKPQLACFSADCPL---LHKRGVMFTCNRTQTV--YNLQQVVKMVNDTITR 1503
>NAS26_CAEEL (Q22710) Zinc metalloproteinase nas-26 precursor (EC 3.4.24.21)| (Nematode astacin 26) (Tollish protein 1) Length = 414 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = +3 Query: 156 YDWEHQLIYITSWGADWEWKAILEQGI 236 YDW I WG D+ +++++ +GI Sbjct: 69 YDWNSYEIPFQIWGGDYNFQSLIRRGI 95
>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -1 Query: 87 ACAVTCIHDVTVRCPLC*MKTCHFASP 7 AC VTC H + CP+ ++ CH P Sbjct: 1152 ACPVTCQHPEPLACPVQCVEGCHAHCP 1178
>VWF_HUMAN (P04275) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -1 Query: 87 ACAVTCIHDVTVRCPLC*MKTCHFASP 7 AC VTC H + CP+ ++ CH P Sbjct: 1152 ACQVTCQHPEPLACPVQCVEGCHAHCP 1178
>EX5C_ECOLI (P07648) Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)| (Exodeoxyribonuclease V 125 kDa polypeptide) Length = 1122 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +3 Query: 75 LQHKQFNMLEHLTSDCKLKS---HRGSKAPYDWEHQLIYITSWGADWEWKAILE 227 L+ + F +L H +D K SKA ++ L+Y W A WE ++E Sbjct: 103 LEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVE 156
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -1 Query: 87 ACAVTCIHDVTVRCPLC*MKTCHFASP 7 AC +TC H + CP+ ++ CH P Sbjct: 1152 ACPITCQHPEPLACPVQCVEGCHAHCP 1178 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,520,005 Number of Sequences: 219361 Number of extensions: 812656 Number of successful extensions: 1871 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1840 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1869 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
