ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl16a05 |
|---|---|
| Clone Library Name | barley_pub |
>ARP6_YEAST (Q12509) Actin-like protein ARP6| Length = 438 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Frame = +2 Query: 11 RHSLFYYCTDNSVTVLPWVANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKYSE---QK 181 +H+L Y D + L +V N K+N PLP ++ + T L P + + Sbjct: 269 KHALEYVLPDFQTSFLGYVRNPRKENV----PLPEDAQIITLTDELFTIPETFFHPEISQ 324 Query: 182 TTKSNIVQ 205 TK IV+ Sbjct: 325 ITKPGIVE 332
>TBX4_MOUSE (P70325) T-box transcription factor TBX4 (T-box protein 4)| Length = 552 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 103 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 246 P K + TG KT Y+L + D++ ++C + VAG +P ++Y Sbjct: 103 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 154
>TBX4_HUMAN (P57082) T-box transcription factor TBX4 (T-box protein 4)| Length = 545 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 103 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 246 P K + TG KT Y+L + D++ ++C + VAG +P ++Y Sbjct: 98 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 149
>TBX4_CANFA (Q861Q9) T-box transcription factor TBX4 (T-box protein 4)| Length = 554 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 103 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAGH----LPQKIY 246 P K + TG KT Y+L + D++ ++C + VAG +P ++Y Sbjct: 105 PSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGKAEPAMPGRLY 156
>GYRB_BORBU (P33769) DNA gyrase subunit B (EC 5.99.1.3)| Length = 639 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%) Frame = +1 Query: 103 PPTKEQHTGKQN----KTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIY 246 P +K + G+ + K ++L S++F T DY +R++ L KIY Sbjct: 152 PTSKVEVVGESSVTGTKVTFLADSEIFETLDYNFDVLEKRLKELAFLNDKIY 203
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = -2 Query: 306 DILRLASYLGAPS 268 DILRLASYLGAPS Sbjct: 909 DILRLASYLGAPS 921
>IMMT_MOUSE (Q8CAQ8) Mitochondrial inner membrane protein (Mitofilin)| Length = 757 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +1 Query: 133 QNKTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIYQYSHRYL 267 ++ T + S + R + Y VQ ARRV + +YQY YL Sbjct: 618 ESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYL 662
>IMMT_HUMAN (Q16891) Mitochondrial inner membrane protein (Mitofilin) (p87/89)| (Proliferation-inducing gene 4 protein) Length = 758 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +1 Query: 133 QNKTSYLLSSQVFRTKDYQVQYCARRVQVAGHLPQKIYQYSHRYL 267 ++ T + S + R + Y VQ ARRV + +YQY YL Sbjct: 619 ESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYL 663
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = -2 Query: 306 DILRLASYLGAPS 268 DILRLASYLGAPS Sbjct: 905 DILRLASYLGAPS 917
>BCA1_YEAST (P38891) Branched-chain-amino-acid aminotransferase, mitochondrial| precursor (EC 2.6.1.42) (BCAT) (TWT1 protein) (ECA39 protein) Length = 393 Score = 28.5 bits (62), Expect = 4.5 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%) Frame = +2 Query: 68 ANKTKQNT*SLHPLPRNSTLANKTKHLICFPRKYSEQ--KTTKSNIVQEGYKLP-----A 226 A +T QNT ++ +N NK+ IC P SE+ K T I Q+ + +P + Sbjct: 98 AYRTPQNTITMFRPDKNMARMNKSAARICLPTFESEELIKLTGKLIEQDKHLVPQGNGYS 157 Query: 227 IYLRKS-INTVTDIYEGAP 280 +Y+R + I T + G P Sbjct: 158 LYIRPTMIGTSKGLGVGTP 176
>TRFR_CHICK (O93603) Thyrotropin-releasing hormone receptor (TRH-R)| (Thyroliberin receptor) Length = 395 Score = 28.1 bits (61), Expect = 5.9 Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +1 Query: 115 EQHTG-KQNKTSYLLSSQVFRTKDYQV 192 E TG +QN T LLSSQ F T +YQV Sbjct: 2 ENGTGDEQNHTGLLLSSQEFVTAEYQV 28
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +2 Query: 11 RHSLFYYCTDNSVTVLPWVANKTKQNT*SLHPLPRNSTLANKTKHL 148 R L+ + ++ +PW + +++ S+ PLP T+A K K L Sbjct: 1066 RELLYLGTALSDMSGIPWPLERVEEDDPSIAPLPEFETVAKKQKEL 1111
>SEMG2_COLGU (Q5U7M8) Semenogelin-2 precursor (Semenogelin II) (SGII)| Length = 582 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +1 Query: 79 KTKHLIPTPPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQ 216 K+++ + P ++H K+NK SY SS T++ Q+ Y + +Q Sbjct: 445 KSQNQVTIPSQDQEHGHKENKISYQSSS----TEERQLNYGGKSIQ 486
>HV3L_HUMAN (P01773) Ig heavy chain V-III region BUR| Length = 119 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 136 NKTSYLLSSQVFRTKDYQVQYCARRVQVAG 225 +K + L + RT+D V YCA+ + VAG Sbjct: 75 SKBTLYLZMKTLRTEDTAVYYCAKLIAVAG 104
>TBX3_CHICK (O73718) T-box transcription factor TBX3 (T-box protein 3)| (Fragment) Length = 414 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = +1 Query: 103 PPTKEQHTGKQNKTSYLLSSQVFRTKDYQVQYCARRVQVAG----HLPQKIY 246 PP K + TG K Y+L + D + ++ R VAG +P+++Y Sbjct: 136 PPFKVRCTGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMY 187
>ATS15_HUMAN (Q8TE58) ADAMTS-15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 15) (ADAM-TS 15) (ADAM-TS15) Length = 950 Score = 27.7 bits (60), Expect = 7.7 Identities = 22/68 (32%), Positives = 28/68 (41%) Frame = +3 Query: 33 ALIIR*QFCHGWQTKQNKTPDPYTPYQGTAHWQTKQNILFAFLASIQNKRLPSPILCKKG 212 AL +R FC WQ K NK D + Y TA T+Q++ A + G Sbjct: 286 ALTLR-NFC-AWQKKLNKVSDKHPEYWDTAILFTRQDLCGATTCDTLG-------MADVG 336 Query: 213 TSCRPSTS 236 T C P S Sbjct: 337 TMCDPKRS 344
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = -2 Query: 306 DILRLASYLGAPS 268 DILRL+SYLGAPS Sbjct: 908 DILRLSSYLGAPS 920 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,003,327 Number of Sequences: 219361 Number of extensions: 1001357 Number of successful extensions: 2986 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2986 length of database: 80,573,946 effective HSP length: 77 effective length of database: 63,683,149 effective search space used: 1528395576 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
