ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YL138_MIMIV (Q5UPK9) Hypothetical protein L138 28 4.7
2Y5597_VIBPA (Q87FT1) UPF0176 protein VPA1597 28 8.0

>YL138_MIMIV (Q5UPK9) Hypothetical protein L138|
          Length = 883

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +1

Query: 145 QFLPRLIMIIIETYNISNTQTAVKPWFL 228
           ++  RL +II+E Y+ SNTQT +KP+ +
Sbjct: 29  KYSDRLNIIIVENYS-SNTQTIIKPYVI 55



to top

>Y5597_VIBPA (Q87FT1) UPF0176 protein VPA1597|
          Length = 326

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 156 REELFSASVSFCPVCHGTRKDYQVDK 79
           + ELF   VS CP CHG   + QV++
Sbjct: 257 QSELFEQGVS-CPKCHGKHSEEQVER 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,622,493
Number of Sequences: 219361
Number of extensions: 511368
Number of successful extensions: 920
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top