ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC134844.3| Mus musculus BAC clone RP24-398A1 from chromosome... 46 0.090
2gb|AC024248.7| Homo sapiens BAC clone RP11-659O3 from 4, complet... 46 0.090
3gb|AC117588.11| Mus musculus chromosome 15, clone RP23-177B8, co... 46 0.090
4gb|AC110222.9| Mus musculus chromosome 3, clone RP24-211P23, com... 44 0.36
5gb|AC161119.3| Mus musculus BAC clone RP23-32J13 from chromosome... 44 0.36
6emb|AL158090.3| Human DNA sequence from clone RP4-564O4 on chrom... 44 0.36
7gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Ca... 44 0.36
8gb|AC025767.6|AC025767 Homo sapiens chromosome 5 clone CTD-2087B... 44 0.36
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
10dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
11dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
12gb|AC100967.15| Mus musculus chromosome 5, clone RP23-74L20, com... 44 0.36
13gb|AC125221.4| Mus musculus BAC clone RP23-74N13 from chromosome... 42 1.4
14gb|AC132248.3| Mus musculus BAC clone RP24-425H24 from chromosom... 42 1.4
15emb|BX530034.9| Zebrafish DNA sequence from clone DKEY-284E7 in ... 42 1.4
16ref|NM_001011382.1| Xenopus tropicalis hypothetical LOC496850 (L... 42 1.4
17emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2... 42 1.4
18emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-8... 42 1.4
19emb|CR761441.2| Xenopus tropicalis finished cDNA, clone TGas140k09 42 1.4
20gb|BC088564.1| Xenopus tropicalis hypothetical LOC496850, mRNA (... 42 1.4
21gb|AC117750.7| Mus musculus chromosome 8, clone RP24-325F22, com... 40 5.6
22gb|AC119884.13| Mus musculus chromosome 15, clone RP24-213O5, co... 40 5.6
23ref|XM_459762.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.6
24gb|AC132119.2| Mus musculus BAC clone RP23-467E2 from chromosome... 40 5.6
25gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence 40 5.6
26gb|AC128670.3| Mus musculus BAC clone RP23-137H4 from chromosome... 40 5.6
27gb|AC115881.8| Mus musculus chromosome 6, clone RP24-365K16, com... 40 5.6
28gb|AC126280.4| Mus musculus BAC clone RP23-10P23 from 16, comple... 40 5.6
29gb|AC002461.2| Homo sapiens BAC clone CTA-204I16 from 7, complet... 40 5.6
30ref|XM_663588.1| Cryptosporidium hominis TU502 hypothetical prot... 40 5.6
31gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome... 40 5.6
32emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chro... 40 5.6
33emb|AL356608.23| Human DNA sequence from clone RP11-724N1 on chr... 40 5.6
34emb|AL109838.11|HSDJ796I8 Human DNA sequence from clone RP4-796I... 40 5.6
35emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 40 5.6
36gb|AC163356.2| Mus musculus BAC clone RP23-13A21 from chromosome... 40 5.6
37gb|AC154740.2| Mus musculus BAC clone RP23-118I16 from chromosom... 40 5.6
38emb|AL807389.7| Zebrafish DNA sequence from clone CH211-237L4 in... 40 5.6
39gb|AC160144.6| Mus musculus 10 BAC RP24-130G2 (Roswell Park Canc... 40 5.6
40gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H0... 40 5.6
41dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
43gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551... 40 5.6
44gb|AC010745.4| Homo sapiens BAC clone RP11-549D18 from 2, comple... 40 5.6
45gb|AC154299.1| Mus musculus BAC clone RP23-402I16 from chromosom... 40 5.6
46gb|AC012305.7| Homo sapiens BAC clone RP11-84G18 from 2, complet... 40 5.6
47dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
48dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
49gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Can... 40 5.6
50emb|CR388225.18| Zebrafish DNA sequence from clone CH211-193C1 i... 40 5.6
51emb|AL831763.6| Mouse DNA sequence from clone RP23-308A23 on chr... 40 5.6
52gb|AC147235.3| Mus musculus BAC clone RP23-353B7 from 6, complet... 40 5.6
53gb|AC147617.3| Mus musculus BAC clone RP23-442G17 from 6, comple... 40 5.6
54emb|AL845467.3| Mouse DNA sequence from clone RP23-435G20 on chr... 40 5.6
55gb|L29112.1|HRSAVIASH Equus caballus satellite polymorphic marke... 40 5.6 
>gb|AC134844.3| Mus musculus BAC clone RP24-398A1 from chromosome 7, complete sequence
          Length = 141942

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 37    acatgcatgacaataatttcaaa 59
             |||||||||||||||||||||||
Sbjct: 98832 acatgcatgacaataatttcaaa 98810
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>gb|AC024248.7| Homo sapiens BAC clone RP11-659O3 from 4, complete sequence
          Length = 202340

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 183   aacatatatatacaacacacaca 205
             |||||||||||||||||||||||
Sbjct: 26310 aacatatatatacaacacacaca 26288
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>gb|AC117588.11| Mus musculus chromosome 15, clone RP23-177B8, complete sequence
          Length = 211177

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 183    aacatatatatacaacacacaca 205
              |||||||||||||||||||||||
Sbjct: 105492 aacatatatatacaacacacaca 105470
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>gb|AC110222.9| Mus musculus chromosome 3, clone RP24-211P23, complete sequence
          Length = 179958

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 184    acatatatatacaacacacaca 205
              ||||||||||||||||||||||
Sbjct: 104479 acatatatatacaacacacaca 104458
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>gb|AC161119.3| Mus musculus BAC clone RP23-32J13 from chromosome 18, complete sequence
          Length = 218697

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 186   atatatatacaacacacacaag 207
             ||||||||||||||||||||||
Sbjct: 82949 atatatatacaacacacacaag 82928
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>emb|AL158090.3| Human DNA sequence from clone RP4-564O4 on chromosome 20 Contains a
             putative novel gene, ESTs and GSSs, complete sequence
          Length = 35094

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 29    agtcgttaacatgcatgacaat 50
             ||||||||||||||||||||||
Sbjct: 16382 agtcgttaacatgcatgacaat 16361
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>gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 184834

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 183   aacatatatatacaacacacac 204
             ||||||||||||||||||||||
Sbjct: 88499 aacatatatatacaacacacac 88520
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>gb|AC025767.6|AC025767 Homo sapiens chromosome 5 clone CTD-2087B2, complete sequence
          Length = 134545

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 29   agtcgttaacatgcatgacaat 50
            ||||||||||||||||||||||
Sbjct: 9262 agtcgttaacatgcatgacaat 9283
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 184      acatatatatacaacacacaca 205
                ||||||||||||||||||||||
Sbjct: 16384709 acatatatatacaacacacaca 16384730
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>dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0404G11
          Length = 167623

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 184   acatatatatacaacacacaca 205
             ||||||||||||||||||||||
Sbjct: 25500 acatatatatacaacacacaca 25521
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>dbj|AP005188.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0473C09
          Length = 141066

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 184   acatatatatacaacacacaca 205
             ||||||||||||||||||||||
Sbjct: 90765 acatatatatacaacacacaca 90786
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>gb|AC100967.15| Mus musculus chromosome 5, clone RP23-74L20, complete sequence
          Length = 229660

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 184   acatatatatacaacacacaca 205
             ||||||||||||||||||||||
Sbjct: 94434 acatatatatacaacacacaca 94413
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>gb|AC125221.4| Mus musculus BAC clone RP23-74N13 from chromosome 7, complete sequence
          Length = 215384

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 183    aacatatatatacaacacacacaag 207
              |||||||| ||||||||||||||||
Sbjct: 154173 aacatatacatacaacacacacaag 154149
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>gb|AC132248.3| Mus musculus BAC clone RP24-425H24 from chromosome 7, complete
            sequence
          Length = 195294

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 183  aacatatatatacaacacacacaag 207
            |||||||| ||||||||||||||||
Sbjct: 7385 aacatatacatacaacacacacaag 7361
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>emb|BX530034.9| Zebrafish DNA sequence from clone DKEY-284E7 in linkage group 9,
             complete sequence
          Length = 94504

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 383   agcaatgcactgacgtactgg 403
             |||||||||||||||||||||
Sbjct: 48871 agcaatgcactgacgtactgg 48891
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>ref|NM_001011382.1| Xenopus tropicalis hypothetical LOC496850 (LOC496850), mRNA
          Length = 2132

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 50   taatttcaaagcatacagccagata 74
            |||||||||||||| ||||||||||
Sbjct: 1165 taatttcaaagcatgcagccagata 1141
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>emb|AL135818.3|CNS01DVH Human chromosome 14 DNA sequence BAC C-2547L24 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 203777

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    catatatatacaacacacaca 205
              |||||||||||||||||||||
Sbjct: 186629 catatatatacaacacacaca 186649
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>emb|AL133153.3|CNS01DU3 Human chromosome 14 DNA sequence BAC R-895M11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 231490

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 185   catatatatacaacacacaca 205
             |||||||||||||||||||||
Sbjct: 98169 catatatatacaacacacaca 98189
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>emb|CR761441.2| Xenopus tropicalis finished cDNA, clone TGas140k09
          Length = 2079

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 50   taatttcaaagcatacagccagata 74
            |||||||||||||| ||||||||||
Sbjct: 1165 taatttcaaagcatgcagccagata 1141
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>gb|BC088564.1| Xenopus tropicalis hypothetical LOC496850, mRNA (cDNA clone MGC:97751
            IMAGE:6988116), complete cds
          Length = 2132

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 50   taatttcaaagcatacagccagata 74
            |||||||||||||| ||||||||||
Sbjct: 1165 taatttcaaagcatgcagccagata 1141
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>gb|AC117750.7| Mus musculus chromosome 8, clone RP24-325F22, complete sequence
          Length = 187432

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    atatatacaacacacacaag 207
              ||||||||||||||||||||
Sbjct: 112418 atatatacaacacacacaag 112399
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>gb|AC119884.13| Mus musculus chromosome 15, clone RP24-213O5, complete sequence
          Length = 168400

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    atatatatacaacacacaca 205
              ||||||||||||||||||||
Sbjct: 136622 atatatatacaacacacaca 136641
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>ref|XM_459762.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E11066g)
           partial mRNA
          Length = 2181

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 47  caataatttcaaagcataca 66
           ||||||||||||||||||||
Sbjct: 347 caataatttcaaagcataca 366
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>gb|AC132119.2| Mus musculus BAC clone RP23-467E2 from chromosome 6, complete sequence
          Length = 161817

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    atatatatacaacacacaca 205
              ||||||||||||||||||||
Sbjct: 123278 atatatatacaacacacaca 123297
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>gb|DQ415922.1| Cleome spinosa clone BAC Cs1, complete sequence
          Length = 146078

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   atatatatacaacacacaca 205
             ||||||||||||||||||||
Sbjct: 43426 atatatatacaacacacaca 43407
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>gb|AC128670.3| Mus musculus BAC clone RP23-137H4 from chromosome 13, complete sequence
          Length = 173020

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   acatatatatacaacacaca 203
             ||||||||||||||||||||
Sbjct: 25984 acatatatatacaacacaca 26003
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>gb|AC115881.8| Mus musculus chromosome 6, clone RP24-365K16, complete sequence
          Length = 164311

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   atatatatacaacacacaca 205
             ||||||||||||||||||||
Sbjct: 61969 atatatatacaacacacaca 61988
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>gb|AC126280.4| Mus musculus BAC clone RP23-10P23 from 16, complete sequence
          Length = 211237

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 183    aacatatatatacaacacacacaa 206
              |||| |||||||||||||||||||
Sbjct: 188097 aacaaatatatacaacacacacaa 188120
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>gb|AC002461.2| Homo sapiens BAC clone CTA-204I16 from 7, complete sequence
          Length = 197273

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    acatatatatacaacacaca 203
              ||||||||||||||||||||
Sbjct: 123098 acatatatatacaacacaca 123117
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>ref|XM_663588.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30237)
            partial mRNA
          Length = 2595

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   gcgtatattttacagaatat 103
            ||||||||||||||||||||
Sbjct: 1520 gcgtatattttacagaatat 1539
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>gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome 16, complete sequence
          Length = 206284

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 183    aacatatatatacaacacacacaa 206
              |||| |||||||||||||||||||
Sbjct: 128206 aacaaatatatacaacacacacaa 128183
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>emb|AL591063.6| Human DNA sequence from clone RP11-535K1 on chromosome 6, complete
             sequence
          Length = 100426

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     attacatgttacaataatat 28
             ||||||||||||||||||||
Sbjct: 18958 attacatgttacaataatat 18977
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>emb|AL356608.23| Human DNA sequence from clone RP11-724N1 on chromosome 10 Contains the
             5' end of the CNNM2 gene for cyclin M2 and a CpG island,
             complete sequence
          Length = 161053

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   acatatatatacaacacaca 203
             ||||||||||||||||||||
Sbjct: 41098 acatatatatacaacacaca 41079
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>emb|AL109838.11|HSDJ796I8 Human DNA sequence from clone RP4-796I8 on chromosome 20 Contains a
             putative novel gene, ESTs, STSs and GSSs, complete
             sequence
          Length = 121235

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   acatatatatacaacacaca 203
             ||||||||||||||||||||
Sbjct: 39424 acatatatatacaacacaca 39443
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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     caataatttcaaagcataca 66
              ||||||||||||||||||||
Sbjct: 813683 caataatttcaaagcataca 813702
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>gb|AC163356.2| Mus musculus BAC clone RP23-13A21 from chromosome 6, complete sequence
          Length = 212612

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    tatattttacagaatatgag 106
             ||||||||||||||||||||
Sbjct: 56934 tatattttacagaatatgag 56915
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>gb|AC154740.2| Mus musculus BAC clone RP23-118I16 from chromosome 9, complete sequence
          Length = 222313

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   atatatatacaacacacaca 205
             ||||||||||||||||||||
Sbjct: 79617 atatatatacaacacacaca 79636
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>emb|AL807389.7| Zebrafish DNA sequence from clone CH211-237L4 in linkage group 10
              Contains a novel gene similar to human KIAA0346, two novel
              genes, a novel gene similar to human and fugu PCOLCE
              (procollagen C-endopeptidase enhancer), the per1 gene for
              period homolog 1 (Drosophila), a novel gene similar to
              vertebrate VAMP2 (vesicle-associated membrane protein 2,
              synaptobrevin 2) and a novel gene similar to human and
              mouse AP4M1 (adaptor-related protein complex 4, mu 1
              subunit), complete sequence
          Length = 143672

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    acaacacacacaaggttttc 213
              ||||||||||||||||||||
Sbjct: 101630 acaacacacacaaggttttc 101649
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>gb|AC160144.6| Mus musculus 10 BAC RP24-130G2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 163335

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    atatatatacaacacacaca 205
              ||||||||||||||||||||
Sbjct: 113002 atatatatacaacacacaca 113021
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>gb|AC090056.2|AC090056 Oryza sativa chromosome 9 clone PAC0663H05, complete sequence
          Length = 161873

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   ctgggagaaaaaagtcctcc 280
             ||||||||||||||||||||
Sbjct: 18165 ctgggagaaaaaagtcctcc 18146
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 261      ctgggagaaaaaagtcctcc 280
                ||||||||||||||||||||
Sbjct: 27463379 ctgggagaaaaaagtcctcc 27463360
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 261     ctgggagaaaaaagtcctcc 280
               ||||||||||||||||||||
Sbjct: 6411495 ctgggagaaaaaagtcctcc 6411514
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>gb|AC009144.5|AC009144 Homo sapiens chromosome 16 clone RP11-551E2, complete sequence
          Length = 173758

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    acatatatatacaacacaca 203
              ||||||||||||||||||||
Sbjct: 154882 acatatatatacaacacaca 154863
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>gb|AC010745.4| Homo sapiens BAC clone RP11-549D18 from 2, complete sequence
          Length = 189894

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    atatatatacaacacacaca 205
              ||||||||||||||||||||
Sbjct: 131144 atatatatacaacacacaca 131163
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>gb|AC154299.1| Mus musculus BAC clone RP23-402I16 from chromosome 13, complete
             sequence
          Length = 196855

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   atatatatacaacacacaca 205
             ||||||||||||||||||||
Sbjct: 72711 atatatatacaacacacaca 72692
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>gb|AC012305.7| Homo sapiens BAC clone RP11-84G18 from 2, complete sequence
          Length = 190385

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 227    gggcaaccagatgcctttcacttc 250
              |||||||||||||||||| |||||
Sbjct: 104565 gggcaaccagatgcctttgacttc 104588
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>dbj|AP005705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0453B09
          Length = 173688

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ctgggagaaaaaagtcctcc 280
             ||||||||||||||||||||
Sbjct: 77572 ctgggagaaaaaagtcctcc 77591
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>dbj|AP006758.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0663H05
          Length = 161938

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    ctgggagaaaaaagtcctcc 280
              ||||||||||||||||||||
Sbjct: 143774 ctgggagaaaaaagtcctcc 143793
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>gb|AC158804.3| Mus musculus 10 BAC RP24-354M22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151309

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   atatatatacaacacacaca 205
             ||||||||||||||||||||
Sbjct: 22186 atatatatacaacacacaca 22205
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>emb|CR388225.18| Zebrafish DNA sequence from clone CH211-193C1 in linkage group 14,
             complete sequence
          Length = 153626

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 102   atgagccatgagtttgagattatt 125
             |||||||||||| |||||||||||
Sbjct: 34868 atgagccatgagattgagattatt 34845
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>emb|AL831763.6| Mouse DNA sequence from clone RP23-308A23 on chromosome 2, complete
             sequence
          Length = 146436

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   ctttcacttcaaatggtttc 260
             ||||||||||||||||||||
Sbjct: 22466 ctttcacttcaaatggtttc 22447
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>gb|AC147235.3| Mus musculus BAC clone RP23-353B7 from 6, complete sequence
          Length = 193668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     tatattttacagaatatgag 106
              ||||||||||||||||||||
Sbjct: 128324 tatattttacagaatatgag 128305
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>gb|AC147617.3| Mus musculus BAC clone RP23-442G17 from 6, complete sequence
          Length = 192625

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     tatattttacagaatatgag 106
              ||||||||||||||||||||
Sbjct: 168781 tatattttacagaatatgag 168762
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>emb|AL845467.3| Mouse DNA sequence from clone RP23-435G20 on chromosome 2, complete
              sequence
          Length = 201400

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    atatatatacaacacacaca 205
              ||||||||||||||||||||
Sbjct: 159313 atatatatacaacacacaca 159294
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>gb|L29112.1|HRSAVIASH Equus caballus satellite polymorphic marker VIAS-H3
          Length = 190

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 186 atatatatacaacacacaca 205
           ||||||||||||||||||||
Sbjct: 108 atatatatacaacacacaca 127


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,521,965
Number of Sequences: 3902068
Number of extensions: 4521965
Number of successful extensions: 123652
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123435
Number of HSP's gapped (non-prelim): 217
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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