ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl16a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCF80_GUITH (O78449) Hypothetical 33.2 kDa protein ycf80 30 1.5
2CRY2_VIBCH (Q9KS67) Cryptochrome-like protein cry2 30 1.9
3SPA12_MOUSE (Q7TMF5) Serpin A12 precursor (Visceral adipose-spec... 29 3.3
4SPA12_RAT (Q8R4Z1) Serpin A12 precursor (Visceral adipose-specif... 29 3.3
5Y085_BUCBP (Q89AY5) Hypothetical UPF0011 protein bbp_085 28 4.3
6YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I 28 7.3
7SWI6_KLULA (P40418) Regulatory protein SWI6 (Cell-cycle box fact... 27 9.5

>YCF80_GUITH (O78449) Hypothetical 33.2 kDa protein ycf80|
          Length = 282

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 68  EILQTFPTKKNSRISIRSFLKYNSGCFKLIGDYMYSFIITG-SWELDSN 211
           EI        NSR+S     KY+   FK I  ++YS  +T   W L SN
Sbjct: 216 EIKNILNVNSNSRVSFHPKQKYDKNWFKGIPIFIYSPTVTNLDWTLKSN 264



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>CRY2_VIBCH (Q9KS67) Cryptochrome-like protein cry2|
          Length = 504

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = -1

Query: 327 SIAGFQRMLWAYSNRASF-CNF*LRSVHRRCE----DVNLAWSSLLSSSHD 190
           S+AGF+R L A S+R  + C+F ++     CE     VN A+ SLL  S D
Sbjct: 253 SVAGFRRSLIALSSRLHWHCHF-IQKFESECEMEFRCVNRAYDSLLQQSSD 302



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>SPA12_MOUSE (Q7TMF5) Serpin A12 precursor (Visceral adipose-specific serpin)|
           (Visceral adipose tissue-derived serine protease
           inhibitor) (Vaspin)
          Length = 413

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 159 EITCTVL*LQGRGNLTATMTMPN 227
           +++CT+L +  RGN+TAT  +P+
Sbjct: 254 QLSCTILEIPYRGNITATFVLPD 276



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>SPA12_RAT (Q8R4Z1) Serpin A12 precursor (Visceral adipose-specific serpin)|
           (Visceral adipose tissue-derived serine protease
           inhibitor) (Vaspin)
          Length = 411

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 159 EITCTVL*LQGRGNLTATMTMPN 227
           +++CT+L +  RGN+TAT  +P+
Sbjct: 254 QLSCTILEMPYRGNITATFVLPD 276



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>Y085_BUCBP (Q89AY5) Hypothetical UPF0011 protein bbp_085|
          Length = 292

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +2

Query: 44  KSLALVTTEILQTFPTKKNSRISIRSFLKYNSGCFKLIGDYMYSFIITGSWELDSNDD 217
           K+  L++  +L+T    K + +S    +K  +G +KL  +Y+Y++ I  +  +  N+D
Sbjct: 236 KNTNLISDAVLKTLKILK-THLSFNKAIKITAGIYKLPKNYLYNYAINNT--ISKNND 290



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>YFK5_SCHPO (P87132) Hypothetical protein C167.05 in chromosome I|
          Length = 601

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 259 ELKVAKRCTIRVGPQHSLETSNRSVHCL 342
           ++K AK   + +GP   + T+NR++ C+
Sbjct: 388 DVKTAKSMKVDIGPTRWIPTANRTIRCI 415



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>SWI6_KLULA (P40418) Regulatory protein SWI6 (Cell-cycle box factor, chain|
           SWI6) (Trans-acting activator of HO endonuclease gene)
           (MBF subunit P90)
          Length = 769

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 110 SIRSFLKYNSGCFKLIGDYMYSFII 184
           S++S   Y+SG F+++ DY+Y  I+
Sbjct: 327 SVKSVNNYDSGTFEILLDYLYPCIV 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,511,988
Number of Sequences: 219361
Number of extensions: 903935
Number of successful extensions: 1874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1874
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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