ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FPS_DROME (P18106) Tyrosine-protein kinase Fps85D (EC 2.7.10.2) ... 31 1.3
2SEM6D_MOUSE (Q76KF0) Semaphorin-6D precursor 28 6.6
3DESS_MYXXA (P02966) Development-specific protein S (Spore coat p... 28 6.6

>FPS_DROME (P18106) Tyrosine-protein kinase Fps85D (EC 2.7.10.2) (dFer)|
          Length = 1325

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 198 RFMQLQPSESSTKSIMLLCSENLHHLCSYFP-TEHRSTQARNRHHLSHRLAPAHALPQE 371
           RF +LQP   S  S+ ++   N      Y P T HR  QA + H+L   +A +   P +
Sbjct: 477 RFNKLQPRSQSLGSLSVIRDGNGPSPARYEPITNHRLRQAASVHYLGEEIATSSTNPPD 535



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>SEM6D_MOUSE (Q76KF0) Semaphorin-6D precursor|
          Length = 1073

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = +2

Query: 203 HATATKRKFH*EY-------HAPLFREPAPFVLLLPNGTQEYTGAESSS 328
           H+    RK H ++       H+PL     P  ++LPN T +Y  + S+S
Sbjct: 796 HSHGASRKEHPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNS 844



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>DESS_MYXXA (P02966) Development-specific protein S (Spore coat protein S)|
          Length = 173

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 381 VKLTPGVRHVLVPNDGTGDDDSAPVYSCVPLGSRSTNGAGSR 256
           VK+ PGV+ +L  NDG   D    V +   LG  + N +  R
Sbjct: 42  VKVPPGVKAILYQNDGFAGDQIEVVANAEELGPLNNNVSSIR 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,434,987
Number of Sequences: 219361
Number of extensions: 1240681
Number of successful extensions: 3342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3341
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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