ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl15h04 |
|---|---|
| Clone Library Name | barley_pub |
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 32.0 bits (71), Expect = 0.39 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +3 Query: 105 PRMQVQQGPRECDVHGRGGSDRGHQHKEQDVGPLAPVPHYPERERVEQQQHPHV 266 P + VQQG R ++HG G + HQ ++Q ++++ +QQ+ PH+ Sbjct: 105 PSVVVQQGGRGDELHGPGALQQQHQQQQQQ----QQQQQQQQQQQQQQQRPPHL 154
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 32.0 bits (71), Expect = 0.39 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F+ W+++ LYPF G+MG ++ P I+ Sbjct: 961 LFFSFWVIVHLYPFLKGLMGRQNRTPTIV 989
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 31.6 bits (70), Expect = 0.51 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +3 Query: 105 PRMQVQQGPRECDVHGRGGSDRGHQHKEQDVGPLAPVPHYPERERVEQQQHPHV 266 P + VQQG R ++HG G + HQ ++Q ++++ +QQ+ PH+ Sbjct: 105 PSVVVQQGGRGDELHGPGALQQQHQQQQQQ--QQQQQQQQQQQQQQQQQRPPHL 156
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 31.6 bits (70), Expect = 0.51 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = +3 Query: 105 PRMQVQQGPRECDVHGRGGSDRGHQHKEQDVGPLAPVPHYPERERVEQQQHPHV 266 P + VQQG R ++HG G + HQ ++Q ++++ +QQ+ PH+ Sbjct: 105 PSVVVQQGGRGDELHGPGALQQQHQQQQQQ--QQQQQQQQQQQQQQQQQRPPHL 156
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 30.8 bits (68), Expect = 0.87 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F +W+++ LYPF G++G K P I+ Sbjct: 1018 LFFALWVIVHLYPFLKGMLGKQDKMPTII 1046
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 30.8 bits (68), Expect = 0.87 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F W+++ LYPF G+MG ++ P I+ Sbjct: 984 LFFAFWVIVHLYPFLKGLMGRQNRTPTIV 1012
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 30.8 bits (68), Expect = 0.87 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F W+++ LYPF G+MG ++ P I+ Sbjct: 1000 LFFAFWVIVHLYPFLKGLMGRQNRTPTIV 1028
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 30.8 bits (68), Expect = 0.87 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = -2 Query: 269 FNVWMLLLLYPFALGIMGHWSKRPYIL 189 F W++L LYPF G+MG ++ P I+ Sbjct: 920 FAFWVILHLYPFLKGLMGRQNRTPTIV 946
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F +W+++ LYPF G++G + P I+ Sbjct: 1019 LFFALWVIIHLYPFLKGLLGKQDRMPTII 1047
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/29 (41%), Positives = 18/29 (62%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F W++L LYPF G++G + P I+ Sbjct: 1004 LFFAFWVILHLYPFLKGLLGKQDRMPTII 1032
>IBP2_CHICK (P49705) Insulin-like growth factor-binding protein 2 precursor| (IGFBP-2) (IBP-2) (IGF-binding protein 2) Length = 311 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -1 Query: 309 VGSAGRGGGERACFQRVDAAAALPVRARDNGALEQEALHPVPC 181 +G GRGG RA + R+ AA P A AL + PC Sbjct: 3 LGGVGRGGAARAAWPRLLLAALAPALALAGPALPEVLFRCPPC 45
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 29.6 bits (65), Expect = 1.9 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F +W++ LYPF G++G ++ P I+ Sbjct: 1015 LFFALWVIAHLYPFLKGLLGRQNRTPTIV 1043
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L F +W+++ LYPF G++G + P I+ Sbjct: 1022 LFFALWVIVHLYPFLKGLLGKQDRVPTII 1050
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -2 Query: 275 LVFNVWMLLLLYPFALGIMGHWSKRPYIL 189 L+F W++ LYPF G++G ++ P I+ Sbjct: 1002 LLFAFWVVAHLYPFLKGLLGRQNRTPTIV 1030
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +2 Query: 284 PPPRPALPTTAQRSPCPP 337 PPP PALP++A P PP Sbjct: 341 PPPPPALPSSAPSGPPPP 358
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +2 Query: 284 PPPRPALPTTAQRSPCPP 337 PPP PALP++A P PP Sbjct: 341 PPPPPALPSSAPSGPPPP 358
>CYA1_DROME (P32870) Ca(2+)/calmodulin-responsive adenylate cyclase (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Protein rutabaga) Length = 2248 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +3 Query: 174 HQHKEQDVGPLAPVPHYPERERVEQQQHPHVENK 275 HQHK+ D PL P P P + QQQ + +K Sbjct: 1218 HQHKQHDPLPL-PAPPPPVHHHLHQQQQQRLNSK 1250
>OSTP_MOUSE (P10923) Osteopontin precursor (Bone sialoprotein-1) (Secreted| phosphoprotein 1) (SPP-1) (Minopontin) (Early T-lymphocyte activation 1 protein) (2AR) (Calcium oxalate crystal growth inhibitor protein) Length = 294 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Frame = -1 Query: 273 CFQRVDAAAALPVRARDNGALEQE--ALHPVPCA 178 CF A++LPV+ D+G+ E++ +LHP P A Sbjct: 7 CFCLFGIASSLPVKVTDSGSSEEKLYSLHPDPIA 40
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 108 RMQVQQGPRECDVHGRGGSDRGHQHKEQDVGPLAPVPHYPERERVEQQQHP 260 + Q QQ ++ D+ G + H H+ Q P+AP+ P++ + QHP Sbjct: 673 QQQHQQQQQQADMLQGLGQPQAHPHQHQHQPPVAPMGQ-PQQMQPSPHQHP 722
>VPRT_HTL1C (P14074) Protease (EC 3.4.23.-)| Length = 302 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 272 QARSPPPRPALPTTAQRSPCPP 337 +AR PPP+ P T R CPP Sbjct: 41 EARLPPPKAHYPRTRARGGCPP 62
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +2 Query: 284 PPPRPALPTTAQRSPCPP 337 PPP PALP++A P PP Sbjct: 344 PPPPPALPSSAPSGPPPP 361
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +2 Query: 284 PPPRPALPTTAQRSPCPP 337 PPP PALP++A P PP Sbjct: 344 PPPLPALPSSAPSGPPPP 361
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump| 3) Length = 948 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -2 Query: 338 AAGKAIVGRWSAAQVAGAASGLVFNVWMLLLLYPFALGIM 219 A A+ G W A++ G G +W+ +++ F L IM Sbjct: 798 ATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIM 837
>GBX2_CHICK (O42230) Homeobox protein GBX-2 (Gastrulation and brain-specific| homeobox protein 2) Length = 340 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +2 Query: 284 PPPRPALPTTAQRSPCPP 337 PPP PALP A + P PP Sbjct: 56 PPPPPALPQAALQPPLPP 73
>MTCH1_HUMAN (Q9NZJ7) Mitochondrial carrier homolog 1 (Presenilin-associated| protein) Length = 389 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = -1 Query: 318 WAVVGSAGRGGGERACFQRVDAAAALPVRARD-NGALEQEALHPVPCA 178 WA G+AG G R AAA + RARD A HP P A Sbjct: 11 WARGGAAGMAGAGAGAGARGGAAAGVEARARDPPPAHRAHPRHPRPAA 58
>HXD11_MOUSE (P23813) Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5)| Length = 323 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -1 Query: 339 GGGQGDRWAVVGSAGRGGGERACFQRVDAAAALPVRARDNGALEQEALHP 190 GG G G G G G A + AAAA A + A++++ L P Sbjct: 68 GGAGGGGGGGPGGGGGGSGGYAPYYAAAAAAAAAAAAAEEAAMQRDLLPP 117
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 7/37 (18%) Frame = +3 Query: 174 HQHKEQDVGPLAPVP-------HYPERERVEQQQHPH 263 H H+ Q + P P P H+P + QQ HPH Sbjct: 122 HPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNHPH 158
>Y007_MYCTU (P71575) Hypothetical protein Rv0007/MT0007| Length = 304 Score = 28.1 bits (61), Expect = 5.7 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -2 Query: 311 WSAAQVAGAASGLVFNVWMLLLLYPF-ALGIMGHWSK 204 WS +V+ S +F VWM+ + + + LG MG W+K Sbjct: 199 WSTLKVSLLLSVALFFVWMITVAFLYLVLGGMGVWAK 235
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 28.1 bits (61), Expect = 5.7 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 7/37 (18%) Frame = +3 Query: 174 HQHKEQDVGPLAPVP-------HYPERERVEQQQHPH 263 H H+ Q + P P P H+P + QQ HPH Sbjct: 277 HPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNHPH 313
>HXD11_HUMAN (P31277) Homeobox protein Hox-D11 (Hox-4F)| Length = 338 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -1 Query: 333 GQGDRWAVVGSAGRGGGERACFQRVDAAAALPVRARDNGALEQEALHP 190 G G G G G G A + AAAA A + A+++E L P Sbjct: 85 GGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPP 132
>OXAA_BORPE (P65622) Inner membrane protein oxaA| Length = 563 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +1 Query: 232 ANG*SSSSIHTLKTSPLAAPATCAADHRPTIALPAA 339 ANG ++SS ++ +SP AAPA + P A PAA Sbjct: 50 ANGTAASSTASIPSSPAAAPAAASV---PGAAAPAA 82
>OXAA_BORPA (Q7W2K1) Inner membrane protein oxaA| Length = 563 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +1 Query: 232 ANG*SSSSIHTLKTSPLAAPATCAADHRPTIALPAA 339 ANG ++SS ++ +SP AAPA + P A PAA Sbjct: 50 ANGTAASSTASIPSSPAAAPAAASV---PGAAAPAA 82
>OXAA_BORBR (P65623) Inner membrane protein oxaA| Length = 563 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +1 Query: 232 ANG*SSSSIHTLKTSPLAAPATCAADHRPTIALPAA 339 ANG ++SS ++ +SP AAPA + P A PAA Sbjct: 50 ANGTAASSTASIPSSPAAAPAAASV---PGAAAPAA 82
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 339 GGGQGDRWAVVGSAGRGGGERACF 268 GGG G R+ G G GGG +C+ Sbjct: 160 GGGGGGRYGSGGGGGGGGGGLSCY 183
>GCP5_HUMAN (Q96RT8) Gamma-tubulin complex component 5 (GCP-5)| Length = 1024 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Frame = +3 Query: 129 PRECDVHGRGGSDRGH---QHKEQDVGPLAPVPHYPERERVEQQQHP 260 PR +V + D G + +E D+GP P++ E E Q P Sbjct: 130 PRNKEVEKKDDFDWGKYLMEDEEMDIGPYMDTPNWSEESEEENDQQP 176
>CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog| Length = 319 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 281 SPPPRPALPTTAQRSPCPP 337 SPP PA+P T + P PP Sbjct: 51 SPPTSPAVPQTRENPPSPP 69 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = +2 Query: 281 SPPPRPALPTTAQRSPCPP 337 SPP PA P T++ P PP Sbjct: 35 SPPTSPAAPQTSENPPSPP 53
>ALX1_CAEEL (P34552) Apoptosis-linked gene 2-interacting protein X 1 (Protein| pqn-58) (Protein YNK1) Length = 882 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 278 RSPPPRPALPTTAQRSPCPP 337 R PPPRPA P+ SP PP Sbjct: 756 RPPPPRPAAPSV--ESPIPP 773
>Y007_MYCLE (O32870) Hypothetical protein ML0007| Length = 303 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = -2 Query: 311 WSAAQVAGAASGLVFNVWMLLLLYPF-ALGIMGHWSK 204 WS +V+ S +F VWM+ + + + LG MG W+K Sbjct: 198 WSMLKVSLLLSVALFFVWMIAVAFLYLLLGGMGVWAK 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,950,857 Number of Sequences: 219361 Number of extensions: 728494 Number of successful extensions: 3910 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3209 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3892 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
