>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  147 bits (74), Expect = 2e-32
 Identities = 155/180 (86%), Gaps = 4/180 (2%)
 Strand = Plus / Minus

                                                                           
Query: 126     ctagaatatgcagctacaattaaatatgcctc---tgaaataaaagaacatgaggcgata 182
               |||| ||||||||||| |||||||||||||||   |||||||||||||||||||||| ||
Sbjct: 8142276 ctaggatatgcagctaaaattaaatatgcctcatctgaaataaaagaacatgaggcggta 8142217

                                                                           
Query: 183     tt-aacggcactgctaaccatatcagcccagctccaactaaaactatcagatgtagacca 241
               || || |||| || |||||| | | ||| | ||||| |||||||||| | |||||||| |
Sbjct: 8142216 tttaatggcagtggtaaccacaactgccaaactccagctaaaactatgaaatgtagacaa 8142157

                                                                           
Query: 242     ttacatatgacaaaacccagatgtttgaacaaaaccatctctactatggttatacctacc 301
               |||||| |||||||| |||||||||||||||||||| ||||||||| ||  |||||||||
Sbjct: 8142156 ttacatttgacaaaatccagatgtttgaacaaaaccttctctactaaggccatacctacc 8142097

>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0503B05
          Length = 156814

 Score =  147 bits (74), Expect = 2e-32
 Identities = 155/180 (86%), Gaps = 4/180 (2%)
 Strand = Plus / Minus

                                                                          
Query: 126    ctagaatatgcagctacaattaaatatgcctc---tgaaataaaagaacatgaggcgata 182
              |||| ||||||||||| |||||||||||||||   |||||||||||||||||||||| ||
Sbjct: 130469 ctaggatatgcagctaaaattaaatatgcctcatctgaaataaaagaacatgaggcggta 130410

                                                                          
Query: 183    tt-aacggcactgctaaccatatcagcccagctccaactaaaactatcagatgtagacca 241
              || || |||| || |||||| | | ||| | ||||| |||||||||| | |||||||| |
Sbjct: 130409 tttaatggcagtggtaaccacaactgccaaactccagctaaaactatgaaatgtagacaa 130350

                                                                          
Query: 242    ttacatatgacaaaacccagatgtttgaacaaaaccatctctactatggttatacctacc 301
              |||||| |||||||| |||||||||||||||||||| ||||||||| ||  |||||||||
Sbjct: 130349 ttacatttgacaaaatccagatgtttgaacaaaaccttctctactaaggccatacctacc 130290

>dbj|AK121968.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108F20, full
            insert sequence
          Length = 3463

 Score =  147 bits (74), Expect = 2e-32
 Identities = 155/180 (86%), Gaps = 4/180 (2%)
 Strand = Plus / Minus

                                                                        
Query: 126  ctagaatatgcagctacaattaaatatgcctc---tgaaataaaagaacatgaggcgata 182
            |||| ||||||||||| |||||||||||||||   |||||||||||||||||||||| ||
Sbjct: 3295 ctaggatatgcagctaaaattaaatatgcctcatctgaaataaaagaacatgaggcggta 3236

                                                                        
Query: 183  tt-aacggcactgctaaccatatcagcccagctccaactaaaactatcagatgtagacca 241
            || || |||| || |||||| | | ||| | ||||| |||||||||| | |||||||| |
Sbjct: 3235 tttaatggcagtggtaaccacaactgccaaactccagctaaaactatgaaatgtagacaa 3176

                                                                        
Query: 242  ttacatatgacaaaacccagatgtttgaacaaaaccatctctactatggttatacctacc 301
            |||||| |||||||| |||||||||||||||||||| ||||||||| ||  |||||||||
Sbjct: 3175 ttacatttgacaaaatccagatgtttgaacaaaaccttctctactaaggccatacctacc 3116

>gb|AC164618.3| Mus musculus BAC clone RP23-304L22 from chromosome 14, complete
             sequence
          Length = 208291

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   cagatgtttgaacaaaaccat 279
             |||||||||||||||||||||
Sbjct: 93337 cagatgtttgaacaaaaccat 93317

>gb|AC144531.2| Homo sapiens 3 BAC RP11-945M2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 127580

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     ctttcacaaagccagtccctg 51
              |||||||||||||||||||||
Sbjct: 122300 ctttcacaaagccagtccctg 122280

>gb|AC159886.2| Mus musculus BAC clone RP24-397P9 from chromosome 9, complete sequence
          Length = 191328

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 20    ttccatctttgctttcacaaa 40
             |||||||||||||||||||||
Sbjct: 75157 ttccatctttgctttcacaaa 75177

>gb|AC093298.3| Homo sapiens chromosome 5 clone RP11-543L14, complete sequence
          Length = 198687

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 141    acaattaaatatgcctctgaa 161
              |||||||||||||||||||||
Sbjct: 181645 acaattaaatatgcctctgaa 181665

>dbj|AK085886.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched
            library, clone:D830024B02 product:unclassifiable, full
            insert sequence
          Length = 2740

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 20   ttccatctttgctttcacaaa 40
            |||||||||||||||||||||
Sbjct: 2246 ttccatctttgctttcacaaa 2226

>gb|AC147673.3| Pan troglodytes BAC clone CH251-13F15 from Y, complete sequence
          Length = 164583

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   cctctgaaataaaagaacat 173
             ||||||||||||||||||||
Sbjct: 55880 cctctgaaataaaagaacat 55899

>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence
          Length = 199569

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  ctttcacaaagccagtccct 50
           ||||||||||||||||||||
Sbjct: 924 ctttcacaaagccagtccct 943

>gb|AY514454.1| Vibrio fischeri flagellar hook-associated protein 3, flagellin
            subunit A (flaA), flagellin subunit B (flaB), flagellin
            subunit C (flaC), and flagellin subunit D (flaD) genes,
            complete cds; and flagellin subunit E (flaE) gene,
            partial cds
          Length = 9258

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 3    gttttttaaataaatgcttc 22
            ||||||||||||||||||||
Sbjct: 2903 gttttttaaataaatgcttc 2884

>emb|CR388412.9| Zebrafish DNA sequence from clone CH211-69G13 in linkage group 5,
              complete sequence
          Length = 158289

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gggttttttaaataaatgct 20
              ||||||||||||||||||||
Sbjct: 103336 gggttttttaaataaatgct 103355

>emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chromosome 17, complete
              sequence
          Length = 207434

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     tgcttccatctttgctttca 36
              ||||||||||||||||||||
Sbjct: 134102 tgcttccatctttgctttca 134121

>gb|AC139192.1| Pan troglodytes BAC clone RP43-44N16 from Y, complete sequence
          Length = 149965

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    cctctgaaataaaagaacat 173
              ||||||||||||||||||||
Sbjct: 108711 cctctgaaataaaagaacat 108692

>gb|AC139194.1| Pan troglodytes BAC clone RP43-164C2 from Y, complete sequence
          Length = 182587

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   cctctgaaataaaagaacat 173
             ||||||||||||||||||||
Sbjct: 78514 cctctgaaataaaagaacat 78495

>emb|AL161717.15| Human DNA sequence from clone RP11-267P7 on chromosome 13, complete
             sequence
          Length = 103720

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   tacatatgacaaaacccaga 262
             ||||||||||||||||||||
Sbjct: 23916 tacatatgacaaaacccaga 23897

>gb|AC105141.7| Homo sapiens chromosome 8, clone CTD-3110J21, complete sequence
          Length = 137952

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tgaacaaaaccatctctact 286
             ||||||||||||||||||||
Sbjct: 31588 tgaacaaaaccatctctact 31607

>emb|Z50798.1|GGDP52MR G.gallus mRNA for p52
          Length = 2947

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 tgagtgaactacatctagaa 131
           ||||||||||||||||||||
Sbjct: 501 tgagtgaactacatctagaa 520

>gb|AC105910.10| Homo sapiens chromosome 8, clone CTD-2036J7, complete sequence
          Length = 190836

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    tgaacaaaaccatctctact 286
              ||||||||||||||||||||
Sbjct: 143648 tgaacaaaaccatctctact 143667

>emb|Z11509.1|ATRPCL9G A.thaliana rp19 gene for chloroplast ribosomal protein CL9
          Length = 2737

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  atgacaaaacccagatgttt 267
            ||||||||||||||||||||
Sbjct: 2694 atgacaaaacccagatgttt 2713

>emb|AL391254.2|ATF28D10 Arabidopsis thaliana DNA chromosome 3, BAC clone F28D10
          Length = 49890

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   atgacaaaacccagatgttt 267
             ||||||||||||||||||||
Sbjct: 29171 atgacaaaacccagatgttt 29190

>gb|AC105206.8| Homo sapiens chromosome 8, clone CTD-2530N21, complete sequence
          Length = 218931

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tgaacaaaaccatctctact 286
             ||||||||||||||||||||
Sbjct: 24170 tgaacaaaaccatctctact 24189

>ref|NM_205089.1| Gallus gallus protein kinase C and casein kinase substrate in
           neurons 2 (PACSIN2), mRNA
          Length = 2947

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 tgagtgaactacatctagaa 131
           ||||||||||||||||||||
Sbjct: 501 tgagtgaactacatctagaa 520

>gb|AC162925.4| Mus musculus BAC clone RP23-302D18 from chromosome 6, complete sequence
          Length = 225947

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    tgcctctgaaataaaagaac 171
              ||||||||||||||||||||
Sbjct: 209615 tgcctctgaaataaaagaac 209596

>dbj|BS000627.2| Pan troglodytes chromosome Y clone: PTB-087E03, complete sequence
          Length = 203922

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    cctctgaaataaaagaacat 173
              ||||||||||||||||||||
Sbjct: 141666 cctctgaaataaaagaacat 141647

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 154      cctctgaaataaaagaacat 173
                ||||||||||||||||||||
Sbjct: 21097995 cctctgaaataaaagaacat 21098014

>gb|AC182764.2| Gallus gallus BAC clone CH261-140B3 from chromosome 1, complete
             sequence
          Length = 192460

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   tgtttgaacaaaaccatctc 282
             ||||||||||||||||||||
Sbjct: 34699 tgtttgaacaaaaccatctc 34680

>gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complete sequence
          Length = 199331

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 144    attaaatatgcctctgaaataaaa 167
              |||||||||||||| |||||||||
Sbjct: 122096 attaaatatgcctcagaaataaaa 122073

>emb|CR385642.1| Gallus gallus finished cDNA, clone ChEST384e4
          Length = 865

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 112 tgagtgaactacatctagaa 131
           ||||||||||||||||||||
Sbjct: 532 tgagtgaactacatctagaa 551

>gb|AC156644.2| Pan troglodytes BAC clone CH251-301K8 from chromosome unknown, complete
              sequence
          Length = 165832

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 277    catctctactatggttatacctac 300
              |||||||||||| |||||||||||
Sbjct: 133578 catctctactattgttatacctac 133555

>gb|AC009289.8|AC009289 Homo sapiens, clone RP11-44J3, complete sequence
          Length = 146010

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    acaaagccagtccctgagtt 55
             ||||||||||||||||||||
Sbjct: 77522 acaaagccagtccctgagtt 77503

>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 3       gttttttaaataaatgcttc 22
               ||||||||||||||||||||
Sbjct: 2105778 gttttttaaataaatgcttc 2105797

>gb|AC158400.3| Pan troglodytes BAC clone CH251-530D15 from chromosome unknown,
             complete sequence
          Length = 205243

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 277   catctctactatggttatacctac 300
             |||||||||||| |||||||||||
Sbjct: 73759 catctctactattgttatacctac 73736

>dbj|AP003477.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2047A4
          Length = 179110

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ctttcacaaagccagtccct 50
             ||||||||||||||||||||
Sbjct: 61792 ctttcacaaagccagtccct 61773

>gb|AC140305.3| Mus musculus BAC clone RP23-425A11 from 6, complete sequence
          Length = 190535

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   tgcctctgaaataaaagaac 171
             ||||||||||||||||||||
Sbjct: 32235 tgcctctgaaataaaagaac 32216


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,060,963
Number of Sequences: 3902068
Number of extensions: 4060963
Number of successful extensions: 83190
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83072
Number of HSP's gapped (non-prelim): 112
length of query: 307
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 285
effective length of database: 17,147,199,772
effective search space: 4886951935020
effective search space used: 4886951935020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)