>B4GT3_RAT (Q6P768) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N-a
          Length = 395

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 302 VAAGGQYRCCGC*PRKREYVVVKH 231
           V +GG+YR  GC PR R  ++V H
Sbjct: 110 VESGGRYRPAGCEPRSRTAIIVPH 133

>B4GT3_MOUSE (Q91YY2) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N
          Length = 395

 Score = 30.8 bits (68), Expect = 0.86
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 302 VAAGGQYRCCGC*PRKREYVVVKH 231
           V +GG+YR  GC PR R  ++V H
Sbjct: 110 VESGGRYRPAGCEPRSRTAIIVPH 133

>B4GT3_PONPY (Q5NVN3) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N
          Length = 393

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 302 VAAGGQYRCCGC*PRKREYVVVKH 231
           V  GG+YR  GC PR R  ++V H
Sbjct: 108 VEPGGRYRPAGCEPRSRTAIIVPH 131

>B4GT3_HUMAN (O60512) Beta-1,4-galactosyltransferase 3 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 3) (Beta4Gal-T3) (b4Gal-T3)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 3) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 3) [Includes: N
          Length = 393

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 302 VAAGGQYRCCGC*PRKREYVVVKH 231
           V  GG+YR  GC PR R  ++V H
Sbjct: 108 VEPGGRYRPAGCEPRSRTAIIVPH 131

>NOS2_RAT (Q06518) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type|
           II) (Inducible NO synthase) (Inducible NOS) (iNOS)
          Length = 1147

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 114 WHILF---THTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPI 284
           W  LF   ++  DL+  K  + N  K P    I S T+Q  P  H H   FP+  T T  
Sbjct: 5   WKFLFRVKSYQGDLKEEKDINNNVEKTPGA--IPSPTTQDDPKSHKHQNGFPQFLTGTAQ 62

Query: 285 LTPSSDLHQWHIS 323
             P S L + H++
Sbjct: 63  NVPES-LDKLHVT 74

>MGP_RAT (P08494) Matrix Gla-protein precursor (MGP)|
          Length = 103

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQR 301
           +CY+S  +  S   +P +   N NT+I PQQR
Sbjct: 18  LCYESHESMESYEVSPFTTRRNANTFISPQQR 49

>INLA_LISMO (P25146) Internalin A precursor|
          Length = 800

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 248 TPVSEVNNRNTYIDPQQRLTSMAHLELYSNSV 343
           T ++  NN+ T IDP + LT++  LEL SN++
Sbjct: 145 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 176

>INLA_LISMF (Q723K6) Internalin A precursor|
          Length = 800

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 248 TPVSEVNNRNTYIDPQQRLTSMAHLELYSNSV 343
           T ++  NN+ T IDP + LT++  LEL SN++
Sbjct: 145 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 176

>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C)
          Length = 2350

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +3

Query: 111 TWHILFTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILP--FPRSTTATPI 284
           T H   T  P L  G   ST+QT  P  N     +    PV H H+LP   P   TA+ +
Sbjct: 572 THHPALTPGPHLLAG---STSQTPLPTINTHPLTSGPHHPVHHPHLLPTVLPGVPTAS-L 627

Query: 285 LTPSSDLHQWHISS 326
           L     L   H SS
Sbjct: 628 LGGHPRLESAHASS 641

>Y589_MYCPN (Q50338) Hypothetical protein MPN589 (D02_orf157L)|
          Length = 157

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/74 (25%), Positives = 32/74 (43%)
 Frame = +3

Query: 93  FYHANSTWHILFTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTT 272
           + + N  + +  T T DL GG   S    +    + I SA ++   V +  +LP P+   
Sbjct: 84  YEYKNHGYGLALTDT-DLLGGSSGSLVFNQDKKISSIYSAATESDSVGYAQLLPVPKDVN 142

Query: 273 ATPILTPSSDLHQW 314
              ++  S DL  W
Sbjct: 143 GVSLVKYSYDLILW 156

>MGP_PIG (Q8MJ39) Matrix Gla-protein precursor (MGP)|
          Length = 103

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 206 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMA 316
           +CY+S  +  S    P     N NT+I PQQR  + A
Sbjct: 18  LCYESHESLESYEINPFLNRRNANTFISPQQRWRAKA 54

>MGP_HUMAN (P08493) Matrix Gla-protein precursor (MGP)|
          Length = 103

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 206 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQR 301
           +CY+S  +  S    P     N NT+I PQQR
Sbjct: 18  LCYESHESMESYELNPFINRRNANTFISPQQR 49

>MGP_CHILA (Q6QN06) Matrix Gla-protein precursor (MGP)|
          Length = 103

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 206 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMA 316
           +CY+S  +  S   +P     N NT++ PQQR  + A
Sbjct: 18  VCYESHESMESYEISPFLNRRNANTFMSPQQRWRAKA 54

>RON_HUMAN (Q04912) Macrophage-stimulating protein receptor precursor (EC|
           2.7.10.1) (MSP receptor) (p185-Ron) (CDw136 antigen)
           [Contains: Macrophage-stimulating protein receptor alpha
           chain; Macrophage-stimulating protein receptor beta
           chain]
          Length = 1400

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 48  SRSCSYIYNQRLSLCFYHANSTWHILFT 131
           S +C YI N  +++C  H  S WH++ +
Sbjct: 776 SPNCGYI-NSHITICGQHLTSAWHLVLS 802

>MGP_MOUSE (P19788) Matrix Gla-protein precursor (MGP)|
          Length = 104

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 206 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMA 316
           +CY+S  +  S   +P     N NT++ PQQR  + A
Sbjct: 18  LCYESHESMESYEISPFINRRNANTFMSPQQRWRAKA 54

>LEUK_MOUSE (P15702) Leukosialin precursor (Leucocyte sialoglycoprotein)|
           (Sialophorin) (Ly-48) (B cell differentiation antigen
           LP-3) (CD43 antigen)
          Length = 395

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +3

Query: 162 SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSSDLH 308
           +S+N+T  P      S+ + G PV           TTAT  L PSS++H
Sbjct: 164 TSSNETSGPSVATTVSSKTSGPPV-----------TTATGSLGPSSEMH 201

>AMYI_SACDI (P29760) Glucoamylase S2 precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (GAII)
          Length = 768

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 126 FTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSS 299
           +  T   QGG+ ++T  TK+ PT Y+T+     S     +  P   +TT     T S+
Sbjct: 163 YASTSTKQGGEITTTFVTKNIPTTYLTTIAPTSSVTTVTNFTPTTITTTVCSTGTNSA 220

>TPSN_CANFA (Q5TJE4) Tapasin precursor (TPSN) (TPN) (TAP-binding protein)|
          Length = 449

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 94  STMPTQLGIYSLLIHLTYRGVNKALQIKLSIPPRIIL 204
           +  P Q G Y   +HL Y     AL++ +  PP+I L
Sbjct: 260 AVQPFQEGTYLATVHLPYLQGQVALELSVQKPPKISL 296

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +3

Query: 117 HILFTHTPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTP 293
           H+  T +P  +G +         PPT+     T Q SP+   H+ P PR     P  +P
Sbjct: 211 HVQPTPSPPSRGHQPQPPTHRHAPPTHRHAPPTHQPSPL--RHLPPSPRRQPQPPTYSP 267

>MGP_RABIT (P47841) Matrix Gla-protein precursor (MGP)|
          Length = 103

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 206 ICYKSGVTSVSQPHTPVSEVNNRNTYIDPQQRLTSMA 316
           +CY+S  +  S    P     N NT++ PQQR  + A
Sbjct: 18  LCYESHESMESYEINPFINRRNANTFMSPQQRWMAKA 54

>TOLB_CHLMU (Q9PJE1) Protein tolB precursor|
          Length = 426

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +3

Query: 117 HILFTHTPDLQGGK----*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPI 284
           H L THTP +  GK      STN ++      + S    G      H+ P     + +  
Sbjct: 127 HFLLTHTPGISSGKIIFSLCSTNSSEELKQGELWSVDYDG-----QHLAPLTNEHSLS-- 179

Query: 285 LTPSSDLHQWHISSYIVI 338
           +TP+  +H  HI +YI +
Sbjct: 180 VTPAW-MHISHIPAYIYV 196

>CLD3_HUMAN (O15551) Claudin-3 (Clostridium perfringens enterotoxin receptor 2)|
           (CPE-receptor 2) (CPE-R 2) (Ventral prostate.1 protein
           homolog) (HRVP1)
          Length = 220

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 293 GGQYRCCGC*PRKREYVVVK 234
           GG   CC C PR+++Y   K
Sbjct: 176 GGALLCCSCPPREKKYTATK 195

>AMYH_SACDI (P04065) Glucoamylase S1 precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (GAI)
          Length = 767

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 135 TPDLQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSS 299
           T   QGG+ ++T  TK+ PT Y+T+     S     +  P   +TT     T S+
Sbjct: 165 TSTKQGGEITTTFVTKNIPTTYLTTIAPTSSVTTVTNFTPTTITTTVCSTGTNSA 219

>PGPLA_DROME (Q95T64) Peptidoglycan-recognition protein-LA|
          Length = 368

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 144 LQGGK*SSTNQTKHPPTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSSDLHQWHIS 323
           LQG + +S  Q  H  T+  +S +S G        LP P++    P + PSS ++  H +
Sbjct: 17  LQGRQRASPAQRLHNLTSAGSSTSSSG--------LPLPQNIFTNPAIQPSSVINLNHST 68

Query: 324 SYIV 335
             ++
Sbjct: 69  DVVI 72

>PACC_ASPOR (Q9HFB3) pH-response transcription factor pacC/RIM101|
          Length = 662

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 189 PTNYITSATSQGSPVFHNHILPFPRSTTATPILTPSSDLHQW 314
           P ++ T+ TS G P+  N   P   S T TP LTP S    +
Sbjct: 386 PPSHATATTSAG-PIMAN---PATHSPTGTPALTPPSSAQSY 423


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,818,898
Number of Sequences: 219361
Number of extensions: 1035863
Number of successful extensions: 2418
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2415
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)