ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF035820.1|AF035820 Hordeum vulgare gibberellin action negati... 644 0.0
2emb|AL355578.4| Human DNA sequence from clone RP11-29P20 on chro... 44 0.30
3gb|AC004414.1| Homo sapiens PAC clone RP4-724E13 from 7, complet... 42 1.2
4gb|AC146208.2| Pan troglodytes BAC clone RP43-34A11 from 7, comp... 42 1.2
5emb|BX005355.10| Zebrafish DNA sequence from clone CH211-222M2, ... 42 1.2
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.6
7gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, com... 40 4.6
8gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 4.6
9gb|AC153139.5| Mus musculus BAC clone RP23-411M4 from chromosome... 40 4.6
10dbj|AK087184.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 4.6
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
12gb|AC135560.4| Oryza sativa chromosome 3 BAC OSJNBa0031I04 genom... 40 4.6
13gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cance... 40 4.6 
>gb|AF035820.1|AF035820 Hordeum vulgare gibberellin action negative regulator SPY mRNA,
            complete cds
          Length = 3290

 Score =  644 bits (325), Expect = 0.0
 Identities = 335/337 (99%), Gaps = 1/337 (0%)
 Strand = Plus / Minus

                                                                        
Query: 12   tagaagttgaaatagcctcagttaaattttagagaatctagaagctgttcctacatatac 71
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3273 tagaagttgaaatagcctcagttaaattttagagaatctagaagctgttcctacatatac 3214

                                                                        
Query: 72   aaccaacgcctttctctctgtttctaccatgccaactcaacttggcatatactctttact 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3213 aaccaacgcctttctctctgtttctaccatgccaactcaacttggcatatactctttact 3154

                                                                        
Query: 132  catacacctgacctacaggggggtaaataaagctctacaaatcaaactaagcatcccccc 191
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3153 catacacctgacctacaggggggtaaataaagctctacaaatcagactaagcatcccccc 3094

                                                                        
Query: 192  acgaattatattacatctgctacaagtcaggggtcaccagtgtttcacaaccacatactc 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3093 acgaattatattacatctgctacaagtcaggggtcaccagtgtttcacaaccacatactc 3034

                                                                        
Query: 252  ccgtttccgaggtcaacaaccgcaacacctatattgacccccagcagcgacttacatcaa 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3033 ccgtttccgaggtcaacaaccgcaacacctatattgacccccagcagcgacttacatcaa 2974

                                                 
Query: 312  tggcacatctcgagctatatagtaattcagtgtatgc 348
            ||||||||||||||||||||||||| |||||||||||
Sbjct: 2973 tggcacatctcgagctatatagtaa-tcagtgtatgc 2938
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>emb|AL355578.4| Human DNA sequence from clone RP11-29P20 on chromosome 13q31.1-31.3
             Contains part of a novel gene and a CpG island, complete
             sequence
          Length = 157949

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 13    agaagttgaaatagcctcagtt 34
             ||||||||||||||||||||||
Sbjct: 38184 agaagttgaaatagcctcagtt 38163
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>gb|AC004414.1| Homo sapiens PAC clone RP4-724E13 from 7, complete sequence
          Length = 115045

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    attttagagaatctagaagct 57
             |||||||||||||||||||||
Sbjct: 84389 attttagagaatctagaagct 84369
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>gb|AC146208.2| Pan troglodytes BAC clone RP43-34A11 from 7, complete sequence
          Length = 169225

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     attttagagaatctagaagct 57
              |||||||||||||||||||||
Sbjct: 153878 attttagagaatctagaagct 153898
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>emb|BX005355.10| Zebrafish DNA sequence from clone CH211-222M2, complete sequence
          Length = 227182

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 19    tgaaatagcctcagttaaattttagagaa 47
             ||||||||||| ||||||||| |||||||
Sbjct: 34307 tgaaatagccttagttaaattatagagaa 34279
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       acgcctttctctctgtttct 96
                ||||||||||||||||||||
Sbjct: 18902701 acgcctttctctctgtttct 18902682
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>gb|AC107663.10| Mus musculus chromosome 13, clone RP23-99G9, complete sequence
          Length = 213163

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 8      aatctagaagttgaaatagcctca 31
              ||||||||||||||||||| ||||
Sbjct: 109394 aatctagaagttgaaatagactca 109417
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>gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone rp23-282p18, complete
              sequence
          Length = 217766

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     ttaaattttagagaatctag 52
              ||||||||||||||||||||
Sbjct: 108250 ttaaattttagagaatctag 108231
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>gb|AC153139.5| Mus musculus BAC clone RP23-411M4 from chromosome 13, complete sequence
          Length = 192541

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 8      aatctagaagttgaaatagcctca 31
              ||||||||||||||||||| ||||
Sbjct: 177745 aatctagaagttgaaatagactca 177768
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>dbj|AK087184.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030032M22 product:unclassifiable, full
            insert sequence
          Length = 2935

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   ttaaattttagagaatctag 52
            ||||||||||||||||||||
Sbjct: 2868 ttaaattttagagaatctag 2849
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 77       acgcctttctctctgtttct 96
                ||||||||||||||||||||
Sbjct: 18896742 acgcctttctctctgtttct 18896723
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>gb|AC135560.4| Oryza sativa chromosome 3 BAC OSJNBa0031I04 genomic sequence, complete
             sequence
          Length = 168859

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    acgcctttctctctgtttct 96
             ||||||||||||||||||||
Sbjct: 96940 acgcctttctctctgtttct 96959
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>gb|AC155278.5| Mus musculus 6 BAC RP24-141E2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202028

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      gaatctagaagttgaaatag 26
              ||||||||||||||||||||
Sbjct: 129899 gaatctagaagttgaaatag 129918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,979,599
Number of Sequences: 3902068
Number of extensions: 2979599
Number of successful extensions: 54814
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54768
Number of HSP's gapped (non-prelim): 46
length of query: 348
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 326
effective length of database: 17,147,199,772
effective search space: 5589987125672
effective search space used: 5589987125672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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