>RDRP_PVXHB (Q07630) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 46  GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHFANLHYKWTFLAGHLA 225
           GAY+ E  H +   + K  WR        +  H N       +H   +  + +F A HL 
Sbjct: 212 GAYHHEFSHLQSVKVGKIKWRDPK---DGLLGHLNYTHEQVDTHTVTVQLQESFAANHLY 268

Query: 226 LEQRGS 243
             +RG+
Sbjct: 269 CIRRGN 274

>RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1|
          Length = 1269

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 106  SSGI*RCLYLLDVIIQCYMHLTPSFYELVNYV 11
            +S I  C Y L+ +   YM+ TP  +E+VN++
Sbjct: 1086 ASNIKACQYTLETLCHMYMNDTPMKFEIVNHM 1117

>VGLP_BEV (P23052) Peplomer glycoprotein precursor|
          Length = 1581

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 134 TVCYLKPLCLQWHLEMFVPS*CHNSVLYAPDAIF 33
           T+C+  P         FV   C+N+ LY PDA+F
Sbjct: 334 TLCFGSPF--------FVAQECYNNALYLPDAVF 359

>RDRP_PVXX3 (P17779) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +1

Query: 46  GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHFANLHYKWTFLAGHLA 225
           GAY+ E  H +   + K  WR       +   H N        H   +  + +F A HL 
Sbjct: 212 GAYHHEFAHLQWLKVGKIKWRDPK---DSFLGHLNYTTEQVEMHTVTVQLQESFAANHLY 268

Query: 226 LEQRG 240
             +RG
Sbjct: 269 CIRRG 273

>RDRP_PVX (P09395) RNA replication protein (165 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1456

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +1

Query: 46  GAYNTEL*HQEGTNISKCHWRHKGFR*QTVHQHQNSRKTDTSSHFANLHYKWTFLAGHLA 225
           GAY+ E  H +   + K  WR       +   H N        H   +  + +F A HL 
Sbjct: 212 GAYHHEFSHLQWLKVGKIKWRDPK---DSFLGHLNYTTEQVEMHTVTVQLQESFAANHLY 268

Query: 226 LEQRG 240
             +RG
Sbjct: 269 CIRRG 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,719,751
Number of Sequences: 219361
Number of extensions: 780760
Number of successful extensions: 1668
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)