ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC136636.6| Mus musculus BAC clone RP24-183E22 from chromosom... 44 0.31
2ref|XM_808018.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.2
3gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, c... 40 4.8
4gb|AY691178.1| Catla catla growth hormone receptor mRNA, complet... 40 4.8
5emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on ch... 40 4.8
6gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, comp... 40 4.8
7gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nippon... 40 4.8
8dbj|AK048297.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 4.8
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
11gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, comp... 40 4.8
12dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
13dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
14gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, comp... 40 4.8
15ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511 ... 40 4.8
16dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
17gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.8
18gb|AC151474.2| Mus musculus BAC clone RP23-338P12 from 5, comple... 40 4.8

>gb|AC136636.6| Mus musculus BAC clone RP24-183E22 from chromosome 1, complete sequence
          Length = 182542

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 74     tgagaattcagtaaattttgtcacaa 99
              |||||||||| |||||||||||||||
Sbjct: 124253 tgagaattcactaaattttgtcacaa 124228



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>ref|XM_808018.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506155.20) partial mRNA
          Length = 1503

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 4   cgcaaaggttcaacgagatcgctctatta 32
           |||||||||||||| |||| |||||||||
Sbjct: 726 cgcaaaggttcaaccagatggctctatta 754



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>gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, complete cds
          Length = 2290

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 229 tcgcaacagattgtgcctttggac 252
           |||||||||||| |||||||||||
Sbjct: 233 tcgcaacagattttgcctttggac 256



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>gb|AY691178.1| Catla catla growth hormone receptor mRNA, complete cds
          Length = 2291

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 229 tcgcaacagattgtgcctttggac 252
           |||||||||||| |||||||||||
Sbjct: 236 tcgcaacagattttgcctttggac 259



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>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the
             FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene,
             the FBP2 gene for Fructose-1,6-bisphosphatase 2, a  gene
             for a putative novel protein and one CpG island, complete
             sequence
          Length = 170532

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gtgcctttggactgcagaac 260
             ||||||||||||||||||||
Sbjct: 26274 gtgcctttggactgcagaac 26255



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>gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, complete sequence
          Length = 164269

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 141    agaatccagtaaattttgtc 160
              ||||||||||||||||||||
Sbjct: 152335 agaatccagtaaattttgtc 152316



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>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0050M22, from chromosome 10, complete sequence
          Length = 145417

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                         
Query: 269   gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328
             ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 39508 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 39567

                 
Query: 329   tgac 332
             ||||
Sbjct: 39568 tgac 39571



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>dbj|AK048297.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130047C22 product:ATP-binding cassette,
           sub-family B (MDR/TAP), member 1B, full insert sequence
          Length = 3025

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  accattattgttctcactga 76
           ||||||||||||||||||||
Sbjct: 606 accattattgttctcactga 625



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 269     gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328
               ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 9406024 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9406083

                   
Query: 329     tgac 332
               ||||
Sbjct: 9406084 tgac 9406087



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 82      cagtaaattttgtcacaaca 101
               ||||||||||||||||||||
Sbjct: 9117989 cagtaaattttgtcacaaca 9118008



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>gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, complete sequence
          Length = 177788

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   agaatccagtaaattttgtc 160
             ||||||||||||||||||||
Sbjct: 17862 agaatccagtaaattttgtc 17843



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>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0499C11
          Length = 151369

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     cagtaaattttgtcacaaca 101
              ||||||||||||||||||||
Sbjct: 146996 cagtaaattttgtcacaaca 147015



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>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0011D01
          Length = 168655

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    cagtaaattttgtcacaaca 101
             ||||||||||||||||||||
Sbjct: 18371 cagtaaattttgtcacaaca 18390



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>gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, complete sequence
          Length = 200945

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    accattattgttctcactga 76
             ||||||||||||||||||||
Sbjct: 87394 accattattgttctcactga 87375



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>ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511
           (ENSANGG00000010022), partial mRNA
          Length = 660

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 271 acattctcacagtggacagg 290
           ||||||||||||||||||||
Sbjct: 125 acattctcacagtggacagg 144



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>dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F11, full
            insert sequence
          Length = 2868

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 269  gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328
            ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 2613 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 2554

                
Query: 329  tgac 332
            ||||
Sbjct: 2553 tgac 2550



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 53/64 (82%)
 Strand = Plus / Plus

                                                                           
Query: 269     gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328
               ||||||||||| || |  || |||| |||||||||||  |||  | ||||||||||||||
Sbjct: 9412063 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9412122

                   
Query: 329     tgac 332
               ||||
Sbjct: 9412123 tgac 9412126



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>gb|AC151474.2| Mus musculus BAC clone RP23-338P12 from 5, complete sequence
          Length = 226403

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    accattattgttctcactga 76
             ||||||||||||||||||||
Sbjct: 86944 accattattgttctcactga 86925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,902,966
Number of Sequences: 3902068
Number of extensions: 2902966
Number of successful extensions: 49624
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49550
Number of HSP's gapped (non-prelim): 74
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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