ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC127172.13| Mus musculus strain C57BL/6J clone rp23-387d2 ma... 42 0.95
2gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.95
3emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 i... 42 0.95
4gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.95
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.95
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.95
7dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.95
8emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 i... 42 0.95
9dbj|AK063740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.95
10emb|BX294165.10| Zebrafish DNA sequence from clone DKEYP-20E4 in... 42 0.95
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.95
12gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, co... 42 0.95
13emb|AL589878.12| Mouse DNA sequence from clone RP23-351C7 on chr... 42 0.95
14gb|AC123611.7| Mus musculus chromosome 15, clone RP23-345H23, co... 42 0.95
15gb|AC116774.9| Mus musculus chromosome 3, clone RP24-361N19, com... 40 3.7
16gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, co... 40 3.7
17gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome... 40 3.7
18gb|AC104683.3| Danio rerio clone 102M10, complete sequence 40 3.7
19gb|AC098728.3| Mus musculus BAC clone RP23-3H22 from 15, complet... 40 3.7
20emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chr... 40 3.7
21gb|AC124231.17| Mus musculus chromosome 18, clone RP23-17N19, co... 40 3.7
22gb|AC114486.2| Homo sapiens chromosome 1 clone RP11-371A23, comp... 40 3.7
23gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence 40 3.7
24gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674... 40 3.7
25gb|AC084428.1|CBRG45F20 Caenorhabditis briggsae cosmid G45F20, c... 40 3.7
26dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.7
27gb|AC011990.7| Homo sapiens chromosome 17, clone CTD-2378E21, co... 40 3.7
28emb|AL772151.17| Mouse DNA sequence from clone RP23-320C6 on chr... 40 3.7
29emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11,... 40 3.7
30gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, co... 40 3.7
31gb|AC005939.1|AC005939 Homo sapiens chromosome 17, clone hRPK.46... 40 3.7
32emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 3.7

>gb|AC127172.13| Mus musculus strain C57BL/6J clone rp23-387d2 map 17, complete sequence
          Length = 203077

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 183    ggggacgggagagggagggga 203
              |||||||||||||||||||||
Sbjct: 103538 ggggacgggagagggagggga 103558



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>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0015J03, complete sequence
          Length = 165933

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 205   tacaacaatacacgatttaaaaatt 229
             ||||| |||||||||||||||||||
Sbjct: 56719 tacaataatacacgatttaaaaatt 56743



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>emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 in linkage group 10,
             complete sequence
          Length = 150791

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 75    cttacaatgaacaagtaaaacataa 99
             |||||||||||||| ||||||||||
Sbjct: 92299 cttacaatgaacaaataaaacataa 92323



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>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBb0015J03, complete sequence
          Length = 135940

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 205  tacaacaatacacgatttaaaaatt 229
            ||||| |||||||||||||||||||
Sbjct: 3282 tacaataatacacgatttaaaaatt 3258



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 205     tacaacaatacacgatttaaaaatt 229
               ||||| |||||||||||||||||||
Sbjct: 4289178 tacaataatacacgatttaaaaatt 4289202



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 174      cacggggacggggacgggaga 194
                |||||||||||||||||||||
Sbjct: 23026788 cacggggacggggacgggaga 23026808



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>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415C01
          Length = 138701

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 174   cacggggacggggacgggaga 194
             |||||||||||||||||||||
Sbjct: 97194 cacggggacggggacgggaga 97214



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>emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 in linkage group 15,
             complete sequence
          Length = 175161

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 75    cttacaatgaacaagtaaaacataa 99
             |||||||||||||||||||| ||||
Sbjct: 71620 cttacaatgaacaagtaaaaaataa 71596



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>dbj|AK063740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F07, full
           insert sequence
          Length = 749

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 174 cacggggacggggacgggaga 194
           |||||||||||||||||||||
Sbjct: 426 cacggggacggggacgggaga 446



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>emb|BX294165.10| Zebrafish DNA sequence from clone DKEYP-20E4 in linkage group 22,
             complete sequence
          Length = 125073

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 75    cttacaatgaacaagtaaaacataa 99
             |||||||||||||||||||| ||||
Sbjct: 70680 cttacaatgaacaagtaaaaaataa 70656



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 205     tacaacaatacacgatttaaaaatt 229
               ||||| |||||||||||||||||||
Sbjct: 4289999 tacaataatacacgatttaaaaatt 4290023



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>gb|AC130656.11| Mus musculus chromosome 15, clone RP23-305M4, complete sequence
          Length = 185933

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 254    ttcctatcaaaatcagaaggc 274
              |||||||||||||||||||||
Sbjct: 158299 ttcctatcaaaatcagaaggc 158319



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>emb|AL589878.12| Mouse DNA sequence from clone RP23-351C7 on chromosome 15, complete
              sequence
          Length = 203949

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 183    ggggacgggagagggagggga 203
              |||||||||||||||||||||
Sbjct: 100060 ggggacgggagagggagggga 100040



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>gb|AC123611.7| Mus musculus chromosome 15, clone RP23-345H23, complete sequence
          Length = 209792

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 254    ttcctatcaaaatcagaaggc 274
              |||||||||||||||||||||
Sbjct: 186034 ttcctatcaaaatcagaaggc 186014



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>gb|AC116774.9| Mus musculus chromosome 3, clone RP24-361N19, complete sequence
          Length = 147728

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaattgcatttctcattcat 25
             ||||||||||||||||||||
Sbjct: 91039 aaattgcatttctcattcat 91020



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>gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, complete sequence
          Length = 184796

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     taaaacataacttattatcttttg 113
              |||||| |||||||||||||||||
Sbjct: 140955 taaaacttaacttattatcttttg 140978



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>gb|AC133100.5| Mus musculus BAC clone RP23-98O11 from chromosome 19, complete sequence
          Length = 204855

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   acgatttaaaaattggagcc 235
             ||||||||||||||||||||
Sbjct: 10002 acgatttaaaaattggagcc 9983



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>gb|AC104683.3| Danio rerio clone 102M10, complete sequence
          Length = 51808

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   aacaatacacgatttaaaaa 227
             ||||||||||||||||||||
Sbjct: 30069 aacaatacacgatttaaaaa 30050



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>gb|AC098728.3| Mus musculus BAC clone RP23-3H22 from 15, complete sequence
          Length = 245757

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 177   ggggacggggacgggagagggaggggac 204
             ||||| ||||| ||||||||||||||||
Sbjct: 74009 ggggagggggaggggagagggaggggac 74036



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>emb|AL359770.12| Human DNA sequence from clone RP11-286B9 on chromosome 13, complete
             sequence
          Length = 104638

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     ttgcatttctcattcatgtc 28
             ||||||||||||||||||||
Sbjct: 66317 ttgcatttctcattcatgtc 66336



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>gb|AC124231.17| Mus musculus chromosome 18, clone RP23-17N19, complete sequence
          Length = 219005

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    ggagagggaggggactacaa 209
              ||||||||||||||||||||
Sbjct: 179970 ggagagggaggggactacaa 179989



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>gb|AC114486.2| Homo sapiens chromosome 1 clone RP11-371A23, complete sequence
          Length = 179070

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   gggacgggagagggagggga 203
             ||||||||||||||||||||
Sbjct: 38668 gggacgggagagggagggga 38687



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>gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence
          Length = 194074

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aatgaacaagtaaaacataa 99
             ||||||||||||||||||||
Sbjct: 94450 aatgaacaagtaaaacataa 94431



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>gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674A24, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     aatgaacaagtaaaacataa 99
              ||||||||||||||||||||
Sbjct: 127445 aatgaacaagtaaaacataa 127426



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>gb|AC084428.1|CBRG45F20 Caenorhabditis briggsae cosmid G45F20, complete sequence
          Length = 40493

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ttcagcttcctatcaaaatc 267
             ||||||||||||||||||||
Sbjct: 36225 ttcagcttcctatcaaaatc 36244



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 178     gggacggggacgggagagggaggg 201
               ||||||||||||||| ||||||||
Sbjct: 4946689 gggacggggacgggacagggaggg 4946666



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>gb|AC011990.7| Homo sapiens chromosome 17, clone CTD-2378E21, complete sequence
          Length = 76700

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   aagtgacacaagctggacac 176
             ||||||||||||||||||||
Sbjct: 73549 aagtgacacaagctggacac 73530



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>emb|AL772151.17| Mouse DNA sequence from clone RP23-320C6 on chromosome 4, complete
              sequence
          Length = 128073

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    ggggacgggagagggagggg 202
              ||||||||||||||||||||
Sbjct: 122278 ggggacgggagagggagggg 122297



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>emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11, complete sequence
          Length = 129665

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   cataacttattatcttttgg 114
            ||||||||||||||||||||
Sbjct: 1812 cataacttattatcttttgg 1831



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>gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, complete sequence
          Length = 198851

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 90    taaaacataacttattatcttttg 113
             |||||| |||||||||||||||||
Sbjct: 24305 taaaacttaacttattatcttttg 24328



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>gb|AC005939.1|AC005939 Homo sapiens chromosome 17, clone hRPK.467_K_17, complete sequence
          Length = 179485

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   aagtgacacaagctggacac 176
             ||||||||||||||||||||
Sbjct: 13382 aagtgacacaagctggacac 13363



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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 175     acggggacggggacgggaga 194
               ||||||||||||||||||||
Sbjct: 1462780 acggggacggggacgggaga 1462761


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,162,331
Number of Sequences: 3902068
Number of extensions: 3162331
Number of successful extensions: 71077
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70883
Number of HSP's gapped (non-prelim): 194
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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