ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl15f06 |
|---|---|
| Clone Library Name | barley_pub |
>EFTS_PROMP (Q7TUA9) Elongation factor Ts (EF-Ts)| Length = 218 Score = 35.4 bits (80), Expect = 0.039 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 +GENIKVRRF RYTLGE Sbjct: 183 IGENIKVRRFTRYTLGE 199
>EFTS_PROMM (Q7TV13) Elongation factor Ts (EF-Ts)| Length = 218 Score = 35.4 bits (80), Expect = 0.039 Identities = 15/17 (88%), Positives = 16/17 (94%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 +GENIKVRRF RYTLGE Sbjct: 183 IGENIKVRRFTRYTLGE 199
>EFTS_PROMA (Q7VCB5) Elongation factor Ts (EF-Ts)| Length = 217 Score = 35.0 bits (79), Expect = 0.050 Identities = 14/17 (82%), Positives = 16/17 (94%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 +GEN+KVRRF RYTLGE Sbjct: 183 IGENVKVRRFTRYTLGE 199
>EFTS_SYNPX (Q7U794) Elongation factor Ts (EF-Ts)| Length = 219 Score = 33.5 bits (75), Expect = 0.15 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 +GEN++VRRF RYTLGE Sbjct: 183 IGENVQVRRFTRYTLGE 199
>EFTS_SYNY3 (P74070) Elongation factor Ts (EF-Ts)| Length = 217 Score = 32.3 bits (72), Expect = 0.33 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 LGENI+VRRF+R+ LGE Sbjct: 182 LGENIQVRRFIRFNLGE 198
>EFTS_GUITH (O78481) Elongation factor Ts (EF-Ts)| Length = 219 Score = 32.0 bits (71), Expect = 0.43 Identities = 13/17 (76%), Positives = 16/17 (94%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 LGENI++RRF R+TLGE Sbjct: 184 LGENIQIRRFERFTLGE 200
>EFTS_GLOVI (Q7NJK3) Elongation factor Ts (EF-Ts)| Length = 219 Score = 32.0 bits (71), Expect = 0.43 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 +GENIKVRRF R+ LGE Sbjct: 183 IGENIKVRRFARFVLGE 199
>EFTS_PORPU (P51248) Elongation factor Ts (EF-Ts)| Length = 220 Score = 31.6 bits (70), Expect = 0.56 Identities = 13/16 (81%), Positives = 15/16 (93%) Frame = -3 Query: 258 LGENIKVRRFVRYTLG 211 LGENIK+RRFVR+ LG Sbjct: 184 LGENIKIRRFVRFILG 199
>EFTS_PHATR (Q9TK50) Elongation factor Ts (EF-Ts)| Length = 202 Score = 31.6 bits (70), Expect = 0.56 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 LGENI+V+RF RY LGE Sbjct: 184 LGENIRVQRFTRYVLGE 200
>EFTS_ANTSP (Q02855) Elongation factor Ts (EF-Ts) (Fragment)| Length = 87 Score = 31.6 bits (70), Expect = 0.56 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 LGENIK+RRF R+ LGE Sbjct: 51 LGENIKIRRFERFVLGE 67
>EFTS_GRATL (Q6B8R4) Elongation factor Ts (EF-Ts)| Length = 208 Score = 31.6 bits (70), Expect = 0.56 Identities = 14/17 (82%), Positives = 15/17 (88%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 LGENIKVRRF R+ LGE Sbjct: 187 LGENIKVRRFQRFLLGE 203
>EFTS_SYNP6 (Q5N1Q1) Elongation factor Ts (EF-Ts)| Length = 221 Score = 31.2 bits (69), Expect = 0.73 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 LGENI+VRRF R+ LGE Sbjct: 183 LGENIQVRRFTRFVLGE 199
>EFTS_SYNEL (Q8DIA3) Elongation factor Ts (EF-Ts)| Length = 297 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/17 (70%), Positives = 15/17 (88%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 LGENI++RRF R+ LGE Sbjct: 183 LGENIRIRRFQRFVLGE 199
>CYB_PTEQU (Q9B0Y1) Cytochrome b| Length = 379 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -2 Query: 238 TEVCQVYPRRKLIN*TVTSVPIP-DIRSWAHFDS--S*CIAVASLYSVVLGSMY 86 T + + +P K+IN ++ +P+P + SW +F S + C+AV L + L Y Sbjct: 2 TNIRKTHPLLKIINDSLVDLPVPSSVSSWWNFGSLLAACLAVQILTGLFLAMHY 55
>CYB_PTEMA (Q9B106) Cytochrome b| Length = 379 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -2 Query: 238 TEVCQVYPRRKLIN*TVTSVPIP-DIRSWAHFDS--S*CIAVASLYSVVLGSMY 86 T + + +P K+IN ++ +P+P + SW +F S + C+AV L + L Y Sbjct: 2 TNIRKTHPLLKIINDSLVDLPVPSSVSSWWNFGSLLAACLAVQILTGLFLAMHY 55
>EFTS_GEOSL (P61333) Elongation factor Ts (EF-Ts)| Length = 216 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 +GEN+ VRRF R+ LGE Sbjct: 181 IGENMSVRRFARFVLGE 197
>CYB_ZALCA (Q36266) Cytochrome b| Length = 379 Score = 28.5 bits (62), Expect = 4.7 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Frame = -2 Query: 238 TEVCQVYPRRKLIN*TVTSVPIP-DIRSWAHFDS--S*CIAVASLYSVVLGSMY 86 T + +V+P K+IN ++ +P P +I +W +F S + C+A+ L + L Y Sbjct: 2 TNIRKVHPLAKIINSSLIDLPTPSNISAWWNFGSLLAACLALQILTGLFLAMHY 55
>EFTS_THEMA (Q9X1U1) Elongation factor Ts (EF-Ts)| Length = 199 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -3 Query: 255 GENIKVRRFVRYTLGE 208 GENI+V RF RY +GE Sbjct: 180 GENIRVSRFTRYEIGE 195
>EFTS_CYAME (Q85FR4) Elongation factor Ts (EF-Ts)| Length = 209 Score = 28.1 bits (61), Expect = 6.2 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = -3 Query: 258 LGENIKVRRFVRYTLGE 208 +GENI+++RF R+ LGE Sbjct: 181 VGENIRLKRFARFVLGE 197
>UXUA_SHISS (Q3YU59) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 194 LIYQFSPRVYLTNLRTLMFSPKP 262 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_SHIFL (P0A4S0) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 194 LIYQFSPRVYLTNLRTLMFSPKP 262 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_SHIBS (Q31T20) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 194 LIYQFSPRVYLTNLRTLMFSPKP 262 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_ECOLI (P24215) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 194 LIYQFSPRVYLTNLRTLMFSPKP 262 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_ECOL6 (P0A4R9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 194 LIYQFSPRVYLTNLRTLMFSPKP 262 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>UXUA_ECO57 (Q8XEG9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 194 LIYQFSPRVYLTNLRTLMFSPKP 262 +I QF PR+Y T+LR+ M P Sbjct: 286 MIKQFGPRIYFTHLRSTMREDNP 308
>RCC1_HUMAN (P18754) Regulator of chromosome condensation (Chromosome| condensation protein 1) (Cell cycle regulatory protein) Length = 421 Score = 27.7 bits (60), Expect = 8.1 Identities = 15/46 (32%), Positives = 21/46 (45%) Frame = +3 Query: 3 SLLSSTLKVCKKACGLEPGTIVTGDTKLYMEPSTTEYKLATAMHHD 140 +L+S V ACG G VT D +++ T Y+L T D Sbjct: 339 TLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 384 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,679,076 Number of Sequences: 219361 Number of extensions: 712408 Number of successful extensions: 1449 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1436 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1449 length of database: 80,573,946 effective HSP length: 63 effective length of database: 66,754,203 effective search space used: 1602100872 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
