>gb|AY109575.1| Zea mays CL1708_1 mRNA sequence
          Length = 2612

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                   
Query: 201  atcagttttcgccgagggtatacctgacaaacctccgtaccttgatgttctcccc 255
            ||||||| ||||| ||||| |||| |||||||||||| ||||| |||||||||||
Sbjct: 2362 atcagttctcgcccagggtgtaccggacaaacctccgcaccttaatgttctcccc 2308



 Score = 42.1 bits (21), Expect = 0.86
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 65   agtaacaggtgatacaaaattatacatggaaccgagt 101
            |||||||||||||||  ||||| | ||||||||||||
Sbjct: 2519 agtaacaggtgatacggaattacagatggaaccgagt 2483

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 139      atgaatcaaaatgtgcccaactcctgatgtcagg 172
                |||||||||||| |||||||||||||||||||||
Sbjct: 21699835 atgaatcaaaatatgcccaactcctgatgtcagg 21699802



 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 230      aacctccgtaccttgatgttctcccc 255
                ||||||||||||||||||||||||||
Sbjct: 21699747 aacctccgtaccttgatgttctcccc 21699722



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 1        gatctctcttgtcatctaca 20
                ||||||||||||||||||||
Sbjct: 21699988 gatctctcttgtcatctaca 21699969

>dbj|AK119540.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C06, full
            insert sequence
          Length = 1368

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 139  atgaatcaaaatgtgcccaactcctgatgtcagg 172
            |||||||||||| |||||||||||||||||||||
Sbjct: 1189 atgaatcaaaatatgcccaactcctgatgtcagg 1156



 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 230  aacctccgtaccttgatgttctcccc 255
            ||||||||||||||||||||||||||
Sbjct: 1101 aacctccgtaccttgatgttctcccc 1076



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatctctcttgtcatctaca 20
            ||||||||||||||||||||
Sbjct: 1342 gatctctcttgtcatctaca 1323

>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full
            insert sequence
          Length = 3861

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 139  atgaatcaaaatgtgcccaactcctgatgtcagg 172
            |||||||||||| |||||||||||||||||||||
Sbjct: 3682 atgaatcaaaatatgcccaactcctgatgtcagg 3649



 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 230  aacctccgtaccttgatgttctcccc 255
            ||||||||||||||||||||||||||
Sbjct: 3594 aacctccgtaccttgatgttctcccc 3569



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    gatctctcttgtcatctaca 20
            ||||||||||||||||||||
Sbjct: 3835 gatctctcttgtcatctaca 3816

>dbj|AK062059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C08, full
           insert sequence
          Length = 404

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 139 atgaatcaaaatgtgcccaactcctgatgtcagg 172
           |||||||||||| |||||||||||||||||||||
Sbjct: 225 atgaatcaaaatatgcccaactcctgatgtcagg 192



 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 230 aacctccgtaccttgatgttctcccc 255
           ||||||||||||||||||||||||||
Sbjct: 137 aacctccgtaccttgatgttctcccc 112



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gatctctcttgtcatctaca 20
           ||||||||||||||||||||
Sbjct: 378 gatctctcttgtcatctaca 359

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 139      atgaatcaaaatgtgcccaactcctgatgtcagg 172
                |||||||||||| |||||||||||||||||||||
Sbjct: 21628180 atgaatcaaaatatgcccaactcctgatgtcagg 21628147



 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 230      aacctccgtaccttgatgttctcccc 255
                ||||||||||||||||||||||||||
Sbjct: 21628092 aacctccgtaccttgatgttctcccc 21628067



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 1        gatctctcttgtcatctaca 20
                ||||||||||||||||||||
Sbjct: 21628333 gatctctcttgtcatctaca 21628314

>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                
Query: 139    atgaatcaaaatgtgcccaactcctgatgtcagg 172
              |||||||||||| |||||||||||||||||||||
Sbjct: 112716 atgaatcaaaatatgcccaactcctgatgtcagg 112749



 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 230    aacctccgtaccttgatgttctcccc 255
              ||||||||||||||||||||||||||
Sbjct: 112804 aacctccgtaccttgatgttctcccc 112829



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gatctctcttgtcatctaca 20
              ||||||||||||||||||||
Sbjct: 112563 gatctctcttgtcatctaca 112582

>dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07, map 22, complete
              sequences
          Length = 184809

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 137    tgatgaatcaaaatgtgcccaac 159
              |||||||||||||||||||||||
Sbjct: 133851 tgatgaatcaaaatgtgcccaac 133873

>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 113     caaactagcaacagctatgcat 134
               ||||||||||||||||||||||
Sbjct: 2205587 caaactagcaacagctatgcat 2205608

>gb|AC104514.2| Drosophila melanogaster clone BACR22L21, complete sequence
          Length = 170718

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    agtacaactgagtacaaact 118
             ||||||||||||||||||||
Sbjct: 13521 agtacaactgagtacaaact 13502

>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence
          Length = 235095

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    gtgatacaaaattatacatg 92
             ||||||||||||||||||||
Sbjct: 59225 gtgatacaaaattatacatg 59206

>emb|AL732464.19| Mouse DNA sequence from clone RP23-453F10 on chromosome 4, complete
              sequence
          Length = 192919

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 136    atgatgaatcaaaatgtgcc 155
              ||||||||||||||||||||
Sbjct: 105574 atgatgaatcaaaatgtgcc 105593

>gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, complete sequence
          Length = 189590

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    atacaaaattatacatggaa 95
             ||||||||||||||||||||
Sbjct: 20012 atacaaaattatacatggaa 20031

>gb|AC093294.3| Homo sapiens chromosome 5 clone RP11-524C16, complete sequence
          Length = 171739

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     atacaaaattatacatggaa 95
              ||||||||||||||||||||
Sbjct: 138397 atacaaaattatacatggaa 138416

>gb|AC091500.1|AC091500 Drosophila melanogaster, chromosome 2R, region 54F-55A, BAC clone
              BACR20E20, complete sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 99     agtacaactgagtacaaact 118
              ||||||||||||||||||||
Sbjct: 163386 agtacaactgagtacaaact 163367

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 45      ggtttggaaccaggaacgat 64
               ||||||||||||||||||||
Sbjct: 6355298 ggtttggaaccaggaacgat 6355279

>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     ggtttggaaccaggaacgat 64
              ||||||||||||||||||||
Sbjct: 126364 ggtttggaaccaggaacgat 126345

>emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, complete sequence
          Length = 283185

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    acaaactagcaacagctatg 131
              ||||||||||||||||||||
Sbjct: 181005 acaaactagcaacagctatg 181024

>emb|BX088551.7| Zebrafish DNA sequence from clone CH211-106A19 in linkage group 5,
             complete sequence
          Length = 184417

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   acaaactagcaacagctatg 131
             ||||||||||||||||||||
Sbjct: 69372 acaaactagcaacagctatg 69353

>gb|AC153868.3| Mus musculus BAC RP23-384D16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 211603

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 228    caaacctccgtaccttgatgttct 251
              ||||||||| ||||||||||||||
Sbjct: 188425 caaacctccctaccttgatgttct 188402

>gb|AC153578.4| Mus musculus 6 BAC RP23-218P2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228417

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 228    caaacctccgtaccttgatgttct 251
              ||||||||| ||||||||||||||
Sbjct: 109844 caaacctccctaccttgatgttct 109821

>gb|U50042.1|DDU50042 Dictyostelium discoideum repE homolog of UV-damaged DNA binding
           protein (repE) gene, complete cds
          Length = 4122

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 68  aacaggtgatacaaaattatacat 91
           ||||| ||||||||||||||||||
Sbjct: 373 aacagttgatacaaaattatacat 350

>gb|AE003801.4| Drosophila melanogaster chromosome 2R, section 49 of 73 of the complete
             sequence
          Length = 254899

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    agtacaactgagtacaaact 118
             ||||||||||||||||||||
Sbjct: 90643 agtacaactgagtacaaact 90624

>gb|AC004640.1|AC004640 Drosophila melanogaster DNA sequence (P1s DS07528 (D169) and DS06665
             (D220)), complete sequence
          Length = 79248

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    agtacaactgagtacaaact 118
             ||||||||||||||||||||
Sbjct: 67887 agtacaactgagtacaaact 67868

>gb|AC122284.5| Mus musculus BAC clone RP23-246A5 from 6, complete sequence
          Length = 189521

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    caaacctccgtaccttgatgttct 251
              ||||||||| ||||||||||||||
Sbjct: 160269 caaacctccctaccttgatgttct 160292

>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence
          Length = 192261

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    gtgatacaaaattatacatg 92
             ||||||||||||||||||||
Sbjct: 66679 gtgatacaaaattatacatg 66698

>emb|AL806516.4| Mouse DNA sequence from clone RP23-453N20 on chromosome X, complete
             sequence
          Length = 179534

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   caactgagtacaaactagca 122
             ||||||||||||||||||||
Sbjct: 79655 caactgagtacaaactagca 79674


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,135,615
Number of Sequences: 3902068
Number of extensions: 2135615
Number of successful extensions: 39611
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39508
Number of HSP's gapped (non-prelim): 103
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)