>TF3C1_RAT (Q63505) General transcription factor 3C polypeptide 1 (Transcription|
            factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa
            subunit) (TFIIIC220) (TFIIIC box B-binding subunit)
          Length = 2148

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 122  SHTGGIKSNPSVPLSPNKYWLTDLYPSMITKIFP 223
            SH+ G K N +VP  P  Y L+  Y  + T  FP
Sbjct: 1476 SHSQGPKKNRAVPFVPMSYQLSQSYYKLFTWRFP 1509

>POGZ_HUMAN (Q7Z3K3) Pogo transposable element with ZNF domain|
          Length = 1410

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 137  IKSNPSVPLSPNKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILPPLT 316
            +KS  + P  P +  LT L P++            P+  ST  P  T  HPQ   LPPL 
Sbjct: 887  VKSAGATPAEPEEL-LTPLAPAL------------PSPASTATPPPTPTHPQALALPPLV 933

Query: 317  S 319
            +
Sbjct: 934  T 934

>NCKX1_RAT (Q9QZM6) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger)
          Length = 1181

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +2

Query: 137 IKSNPSVPLSPNKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILPPLT 316
           +K  P+VP++P+        PSM   +FP+  +  P   S   P   ++HP+    P L 
Sbjct: 364 VKPAPAVPMTPS--------PSMTAILFPEAPTSGP---SALPPGWPNLHPKAEYPPDLF 412

Query: 317 SLNSRTE 337
           S+  R +
Sbjct: 413 SVEDRRQ 419

>TF3C1_MOUSE (Q8K284) General transcription factor 3C polypeptide 1 (Transcription|
            factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa
            subunit) (TFIIIC220) (TFIIIC box B-binding subunit)
          Length = 2101

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 122  SHTGGIKSNPSVPLSPNKYWLTDLYPSMITKIFP 223
            SH+ G K N +VP  P  Y L+  Y  + T  FP
Sbjct: 1477 SHSQGPKKNRAVPFVPMSYQLSQSYYKLFTWRFP 1510

>AMELY_BOVIN (Q99004) Amelogenin, Y isoform precursor (Class II amelogenin)|
          Length = 192

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 149 PSVPLSPNKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILP 307
           PS    P   WL      ++++  P  H+ +P  ++  +PA   V PQ+ ++P
Sbjct: 51  PSYGYEPVGGWLHHQIIPVVSQQSPQNHALQPHHHNPMVPAQQPVVPQQPMMP 103

>GBB_MAIZE (P49178) Guanine nucleotide-binding protein beta subunit|
          Length = 380

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 230 HSREPTRNSTQLPATTSV 283
           +SREP RNS +LP  TS+
Sbjct: 287 YSREPDRNSNELPTVTSI 304

>KPTA_FUSNN (Q8R5N7) Probable RNA 2'-phosphotransferase (EC 2.7.-.-)|
          Length = 179

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 137 IKSNPSVPLSPNKYWLTDLYPSMITK 214
           +K N    LS NK WLTD  PS   K
Sbjct: 153 LKENYKFYLSENKVWLTDFVPSKFIK 178

>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1844

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +2

Query: 137 IKSNPSVPLSPNKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILPPLT 316
           ++S+  +   P     +D+ PS    +FP+ +S  P R S +LP T    P R   PP T
Sbjct: 640 LESSTPIEPPPPPIQSSDIPPSAPV-LFPEINS--PHRFSPKLPTTPDFEPTRTSPPPST 696

Query: 317 SLNSRTE 337
           S    T+
Sbjct: 697 SHQDSTD 703

>NAS15_CAEEL (P55115) Zinc metalloproteinase nas-15 precursor (EC 3.4.24.21)|
           (Nematode astacin 15)
          Length = 571

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 170 NKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILPPLTSL 322
           N  W+    P       P K +++P   +T   ATT+  PQ+ +  P+  L
Sbjct: 373 NPGWMRANCPISCGMCIPTKETQKPYVQTTTQAATTTARPQKPVTQPIQPL 423

>AMELX_BOVIN (P02817) Amelogenin, X isoform precursor (Class I amelogenin)|
          Length = 213

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 149 PSVPLSPNKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILP 307
           PS    P   WL      ++++  P  H+ +P  +   +PA   V PQ+ ++P
Sbjct: 51  PSYGYEPMGGWLHHQIIPVVSQQTPQNHALQPHHHIPMVPAQQPVVPQQPMMP 103

>GUDP_PSEPU (P42205) Probable glucarate transporter (D-glucarate permease)|
          Length = 456

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -1

Query: 288 GWTLV---VAGSWVLFRVGSRECLSGNIF 211
           GW  V   + G W+L R GS++  +G+IF
Sbjct: 57  GWAYVLGQIPGGWLLDRFGSKKVYAGSIF 85

>TF3C1_HUMAN (Q12789) General transcription factor 3C polypeptide 1 (Transcription|
            factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa
            subunit) (TFIIIC220) (TFIIIC box B-binding subunit)
          Length = 2109

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 122  SHTGGIKSNPSVPLSPNKYWLTDLYPSMITKIFP 223
            +HT G K N ++P  P  Y L+  Y  + T  FP
Sbjct: 1483 NHTLGPKKNRALPFVPMSYQLSQTYYRIFTWRFP 1516

>IF16_HUMAN (Q16666) Gamma-interferon-inducible protein Ifi-16|
           (Interferon-inducible myeloid differentiation
           transcriptional activator) (IFI 16)
          Length = 785

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 65  KCRQVNRVLKSDHKGI*ARSHTGGIKSNP-SVPLSPNKYWLTDLYPSMITKIFPDKHSRE 241
           K  Q+++++   H  I  +  T    ++P S+ L   +  L   YPS  +  FP+ H R 
Sbjct: 371 KKNQMSKLISEMHSFIQIKKKTNPRNNDPKSMKLPQEQRQLP--YPSEASTTFPESHLRT 428

Query: 242 PTRNSTQLPATT 277
           P     Q+P TT
Sbjct: 429 P-----QMPPTT 435

>AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 149 PSVPLSPNKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILP 307
           PS    P   WL      ++++  P  H+ +P  +   +PA   V PQ+ ++P
Sbjct: 65  PSYGYEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQPMMP 117

>AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 149 PSVPLSPNKYWLTDLYPSMITKIFPDKHSREPTRNSTQLPATTSVHPQR*ILP 307
           PS    P   WL      ++++  P  H+ +P  +   +PA   V PQ+ ++P
Sbjct: 65  PSYGYEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQQPVAPQQPMMP 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,018,618
Number of Sequences: 219361
Number of extensions: 965505
Number of successful extensions: 2206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2206
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)