ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
2dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
3dbj|AK121899.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
4dbj|AK099764.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
5dbj|AK103794.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6ref|XM_382687.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 46 0.072
7emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chr... 44 0.29
8gb|DQ017661.1| Salmonella enterica plasmid pNF1358, complete seq... 42 1.1
9dbj|AB021078.1| plasmid ColIb-P9 DNA, complete sequence 42 1.1
10gb|AC092112.17| Homo sapiens 12 BAC RP11-134N1 (Roswell Park Can... 42 1.1
11ref|NM_128240.1| Arabidopsis thaliana EMB1187; kinase/ phosphotr... 40 4.5
12ref|NM_196108.1| Oryza sativa (japonica cultivar-group) putative... 40 4.5
13gb|AC005740.1| Homo sapiens chromosome 5p, BAC clone 50g21 (LBNL... 40 4.5
14gb|AC145586.4| Mus musculus BAC clone RP24-167J1 from chromosome... 40 4.5
15gb|AC129209.4| Mus musculus BAC clone RP24-318B5 from chromosome... 40 4.5
16gb|AC145742.3| Mus musculus BAC clone RP24-225F21 from chromosom... 40 4.5
17gb|AC160564.2| Pan troglodytes BAC clone CH251-542C24 from chrom... 40 4.5
18gb|AC175494.3| Mus musculus BAC clone RP24-75G20 from chromosome... 40 4.5
19gb|AC147126.2| Mus musculus BAC clone RP24-561J22 from chromosom... 40 4.5
20gb|AC130834.4| Mus musculus BAC clone RP24-119M1 from chromosome... 40 4.5
21gb|AC144855.3| Mus musculus BAC clone RP24-179H2 from chromosome... 40 4.5
22gb|AC140394.3| Mus musculus BAC clone RP24-181E19 from chromosom... 40 4.5
23gb|AC147159.2| Mus musculus BAC clone RP24-259B7 from chromosome... 40 4.5
24gb|AC125086.4| Mus musculus BAC clone RP24-137C4 from chromosome... 40 4.5
25gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete... 40 4.5
26emb|BX005211.21| Zebrafish DNA sequence from clone CH211-128A7 i... 40 4.5
27gb|AC175667.3| Mus musculus BAC clone RP24-372I14 from chromosom... 40 4.5
28gb|AY327045.1| Oryza sativa (japonica cultivar-group) disease-re... 40 4.5
29gb|AC182448.2| Mus musculus BAC clone RP24-490J20 from chromosom... 40 4.5
30gb|AC179922.3| Mus musculus BAC clone RP24-571K5 from chromosome... 40 4.5
31gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 ma... 40 4.5
32gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 40 4.5
33gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar N... 40 4.5
34gb|AC182761.2| Mus musculus BAC clone RP24-91P5 from chromosome ... 40 4.5
35gb|AC091970.3| Homo sapiens chromosome 5 clone RP11-509B9, compl... 40 4.5
36gb|AC175818.2| Mus musculus BAC clone RP24-566J3 from chromosome... 40 4.5
37emb|BX323835.9| Zebrafish DNA sequence from clone DKEYP-22F6 in ... 40 4.5
38gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence 40 4.5
39gb|AC175461.3| Mus musculus BAC clone RP24-64J17 from chromosome... 40 4.5
40dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
41emb|BX819677.1|CNS0AA0I Arabidopsis thaliana Full-length cDNA Co... 40 4.5
42emb|BX819992.1|CNS0A8EY Arabidopsis thaliana Full-length cDNA Co... 40 4.5
43gb|AC145572.4| Mus musculus BAC clone RP24-95P13 from chromosome... 40 4.5
44gb|AC021849.5| Homo sapiens BAC clone RP11-366G5 from 2, complet... 40 4.5
45gb|AC078847.2|AC078847 Homo sapiens chromosome 7 clone RP11-3M15... 40 4.5
46gb|AY087681.1| Arabidopsis thaliana clone 37620 mRNA, complete s... 40 4.5
47gb|AC175033.2| Mus musculus BAC clone RP24-283I7 from chromosome... 40 4.5
48emb|BX004764.8| Zebrafish DNA sequence from clone DKEY-162L4 in ... 40 4.5
49dbj|BS000085.1| Pan troglodytes chromosome 22 clone:RP43-164H01,... 40 4.5
50dbj|AK100740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
51gb|AC134599.4| Mus musculus BAC clone RP23-192O14 from 12, compl... 40 4.5
52dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.5
53gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
54gb|AC145575.3| Mus musculus BAC clone RP24-103M14 from Y, comple... 40 4.5
55gb|AC140421.4| Mus musculus BAC clone RP24-441H14 from Y, comple... 40 4.5
56gb|AC148013.3| Mus musculus BAC clone RP23-134C2 from 18, comple... 40 4.5
57emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chro... 40 4.5
58emb|BX649554.17| Zebrafish DNA sequence from clone DKEYP-71F10 i... 40 4.5
59emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chro... 40 4.5
60dbj|AP000949.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 4.5
61dbj|AP001116.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 4.5 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 272      ttctgcttcttgtattccttgtacatgcttatggatgacaa 312
                ||||||||||||||||||||||||| | | |||||||||||
Sbjct: 17293338 ttctgcttcttgtattccttgtacaagttgatggatgacaa 17293298
to top
>dbj|AP003620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0596H06
          Length = 142832

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 272   ttctgcttcttgtattccttgtacatgcttatggatgacaa 312
             ||||||||||||||||||||||||| | | |||||||||||
Sbjct: 29931 ttctgcttcttgtattccttgtacaagttgatggatgacaa 29891
to top
>dbj|AK121899.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105F16, full
            insert sequence
          Length = 2880

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 272  ttctgcttcttgtattccttgtacatgcttatggatgacaa 312
            ||||||||||||||||||||||||| | | |||||||||||
Sbjct: 2584 ttctgcttcttgtattccttgtacaagttgatggatgacaa 2544
to top
>dbj|AK099764.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094N16, full
            insert sequence
          Length = 2836

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 272  ttctgcttcttgtattccttgtacatgcttatggatgacaa 312
            ||||||||||||||||||||||||| | | |||||||||||
Sbjct: 2645 ttctgcttcttgtattccttgtacaagttgatggatgacaa 2605
to top
>dbj|AK103794.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145O08, full
            insert sequence
          Length = 3063

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 272  ttctgcttcttgtattccttgtacatgcttatggatgacaa 312
            ||||||||||||||||||||||||| | | |||||||||||
Sbjct: 2584 ttctgcttcttgtattccttgtacaagttgatggatgacaa 2544
to top
>ref|XM_382687.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02511.1)
           partial mRNA
          Length = 2304

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 256 tttcttgcttgcctttttctgcttcttgtattcct 290
           |||||||||| |||| ||||||||||||| |||||
Sbjct: 732 tttcttgcttcccttcttctgcttcttgtcttcct 698
to top
>emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chromosome 9, complete
             sequence
          Length = 51132

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 263   cttgcctttttctgcttcttgtattccttg 292
             |||||||| ||| |||||||||||||||||
Sbjct: 47843 cttgccttcttcagcttcttgtattccttg 47814
to top
>gb|DQ017661.1| Salmonella enterica plasmid pNF1358, complete sequence
          Length = 99331

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 252   ttgatttcttgcttgcctttttctgcttc 280
             |||||||||||||| ||||||||| ||||
Sbjct: 94579 ttgatttcttgcttccctttttcttcttc 94607
to top
>dbj|AB021078.1| plasmid ColIb-P9 DNA, complete sequence
          Length = 93399

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 252   ttgatttcttgcttgcctttttctgcttc 280
             |||||||||||||| ||||||||| ||||
Sbjct: 88647 ttgatttcttgcttccctttttcttcttc 88675
to top
>gb|AC092112.17| Homo sapiens 12 BAC RP11-134N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 86057

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   tacagtggtgctacaacagaa 177
             |||||||||||||||||||||
Sbjct: 40861 tacagtggtgctacaacagaa 40841
to top
>ref|NM_128240.1| Arabidopsis thaliana EMB1187; kinase/ phosphotransferase, alcohol
            group as acceptor AT2G26830 (EMB1187) mRNA, complete cds
          Length = 1311

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  ttctgcttcttgtattccttgtac 295
            ||||||||||||||||| ||||||
Sbjct: 1114 ttctgcttcttgtattcattgtac 1091
to top
>ref|NM_196108.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           protein (OJ1003C07.3), mRNA
          Length = 2694

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tacaacagaattgggggaca 187
           ||||||||||||||||||||
Sbjct: 667 tacaacagaattgggggaca 686
to top
>gb|AC005740.1| Homo sapiens chromosome 5p, BAC clone 50g21 (LBNL H154), complete
             sequence
          Length = 186780

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   ttctgcttcttgtattcctt 291
             ||||||||||||||||||||
Sbjct: 98431 ttctgcttcttgtattcctt 98450
to top
>gb|AC145586.4| Mus musculus BAC clone RP24-167J1 from chromosome Y, complete sequence
          Length = 158469

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 107901 gatttcttttttgcctttttctgcttct 107874
to top
>gb|AC129209.4| Mus musculus BAC clone RP24-318B5 from chromosome Y, complete
            sequence
          Length = 177935

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 254  gatttcttgcttgcctttttctgcttct 281
            ||||||||  ||||||||||||||||||
Sbjct: 6168 gatttcttttttgcctttttctgcttct 6195
to top
>gb|AC145742.3| Mus musculus BAC clone RP24-225F21 from chromosome Y, complete sequence
          Length = 183572

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 28961 gatttcttttttgcctttttctgcttct 28988
to top
>gb|AC160564.2| Pan troglodytes BAC clone CH251-542C24 from chromosome 5, complete
              sequence
          Length = 177047

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    tttcttgcttgcctttttct 275
              ||||||||||||||||||||
Sbjct: 173915 tttcttgcttgcctttttct 173896
to top
>gb|AC175494.3| Mus musculus BAC clone RP24-75G20 from chromosome y, complete sequence
          Length = 229858

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 226775 gatttcttttttgcctttttctgcttct 226802
to top
>gb|AC147126.2| Mus musculus BAC clone RP24-561J22 from chromosome Y, complete sequence
          Length = 141049

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 81467 gatttcttttttgcctttttctgcttct 81494
to top
>gb|AC130834.4| Mus musculus BAC clone RP24-119M1 from chromosome Y, complete sequence
          Length = 189883

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 167127 gatttcttttttgcctttttctgcttct 167154
to top
>gb|AC144855.3| Mus musculus BAC clone RP24-179H2 from chromosome Y, complete sequence
          Length = 152731

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 102603 gatttcttttttgcctttttctgcttct 102630
to top
>gb|AC140394.3| Mus musculus BAC clone RP24-181E19 from chromosome Y, complete sequence
          Length = 163379

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 153554 gatttcttttttgcctttttctgcttct 153527
to top
>gb|AC147159.2| Mus musculus BAC clone RP24-259B7 from chromosome Y, complete sequence
          Length = 150659

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 45795 gatttcttttttgcctttttctgcttct 45822
to top
>gb|AC125086.4| Mus musculus BAC clone RP24-137C4 from chromosome 18, complete sequence
          Length = 120722

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   tttcttgcttgcctttttct 275
             ||||||||||||||||||||
Sbjct: 20576 tttcttgcttgcctttttct 20595
to top
>gb|AC125229.3| Mus musculus BAC clone RP23-45P1 from 5, complete sequence
          Length = 167771

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   ttttttgatttcttgcttgc 267
             ||||||||||||||||||||
Sbjct: 16322 ttttttgatttcttgcttgc 16341
to top
>emb|BX005211.21| Zebrafish DNA sequence from clone CH211-128A7 in linkage group 14,
            complete sequence
          Length = 191332

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  atcttgcacagaaactgcaa 127
            ||||||||||||||||||||
Sbjct: 6606 atcttgcacagaaactgcaa 6625
to top
>gb|AC175667.3| Mus musculus BAC clone RP24-372I14 from chromosome y, complete sequence
          Length = 167889

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 38062 gatttcttttttgcctttttctgcttct 38089
to top
>gb|AY327045.1| Oryza sativa (japonica cultivar-group) disease-resistant protein
           DS3 mRNA, complete cds
          Length = 2913

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tacaacagaattgggggaca 187
           ||||||||||||||||||||
Sbjct: 758 tacaacagaattgggggaca 777
to top
>gb|AC182448.2| Mus musculus BAC clone RP24-490J20 from chromosome y, complete sequence
          Length = 222797

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 88497 gatttcttttttgcctttttctgcttct 88470
to top
>gb|AC179922.3| Mus musculus BAC clone RP24-571K5 from chromosome y, complete sequence
          Length = 151241

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 24201 gatttcttttttgcctttttctgcttct 24228
to top
>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete
             sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 272   ttctgcttcttgtattccttgtac 295
             ||||||||||||||||| ||||||
Sbjct: 57617 ttctgcttcttgtattcattgtac 57640
to top
>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OJ1003C07, from chromosome 10, complete
             sequence
          Length = 115188

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   tacaacagaattgggggaca 187
             ||||||||||||||||||||
Sbjct: 16362 tacaacagaattgggggaca 16381
to top
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   tacaacagaattgggggaca 187
             ||||||||||||||||||||
Sbjct: 10815 tacaacagaattgggggaca 10796
to top
>gb|AC182761.2| Mus musculus BAC clone RP24-91P5 from chromosome y, complete sequence
          Length = 212528

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 160781 gatttcttttttgcctttttctgcttct 160754
to top
>gb|AC091970.3| Homo sapiens chromosome 5 clone RP11-509B9, complete sequence
          Length = 170119

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   tttcttgcttgcctttttct 275
             ||||||||||||||||||||
Sbjct: 46047 tttcttgcttgcctttttct 46028
to top
>gb|AC175818.2| Mus musculus BAC clone RP24-566J3 from chromosome y, complete sequence
          Length = 125354

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 105027 gatttcttttttgcctttttctgcttct 105000
to top
>emb|BX323835.9| Zebrafish DNA sequence from clone DKEYP-22F6 in linkage group 14,
            complete sequence
          Length = 172378

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 108  atcttgcacagaaactgcaa 127
            ||||||||||||||||||||
Sbjct: 2057 atcttgcacagaaactgcaa 2076
to top
>gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence
          Length = 191204

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 251    tttgatttcttgcttgcctttttctgct 278
              |||| |||||||||||||||||| ||||
Sbjct: 148775 tttggtttcttgcttgcctttttttgct 148802
to top
>gb|AC175461.3| Mus musculus BAC clone RP24-64J17 from chromosome y, complete sequence
          Length = 219754

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 107815 gatttcttttttgcctttttctgcttct 107788
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 168      tacaacagaattgggggaca 187
                ||||||||||||||||||||
Sbjct: 11142695 tacaacagaattgggggaca 11142676
to top
>emb|BX819677.1|CNS0AA0I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZE05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1870

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  ttctgcttcttgtattccttgtac 295
            ||||||||||||||||| ||||||
Sbjct: 1710 ttctgcttcttgtattcattgtac 1687
to top
>emb|BX819992.1|CNS0A8EY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS58ZA01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1206

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  ttctgcttcttgtattccttgtac 295
            ||||||||||||||||| ||||||
Sbjct: 1065 ttctgcttcttgtattcattgtac 1042
to top
>gb|AC145572.4| Mus musculus BAC clone RP24-95P13 from chromosome y, complete sequence
          Length = 181745

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 254    gatttcttgcttgcctttttctgcttct 281
              ||||||||  ||||||||||||||||||
Sbjct: 134976 gatttcttttttgcctttttctgcttct 134949
to top
>gb|AC021849.5| Homo sapiens BAC clone RP11-366G5 from 2, complete sequence
          Length = 168710

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 263   cttgcctttttctgcttcttgtattcct 290
             ||||||||||| || |||||||||||||
Sbjct: 28661 cttgcctttttatgtttcttgtattcct 28634
to top
>gb|AC078847.2|AC078847 Homo sapiens chromosome 7 clone RP11-3M15, complete sequence
          Length = 170919

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    tttctgcttcttgtattcct 290
              ||||||||||||||||||||
Sbjct: 106297 tttctgcttcttgtattcct 106316
to top
>gb|AY087681.1| Arabidopsis thaliana clone 37620 mRNA, complete sequence
          Length = 1308

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  ttctgcttcttgtattccttgtac 295
            ||||||||||||||||| ||||||
Sbjct: 1114 ttctgcttcttgtattcattgtac 1091
to top
>gb|AC175033.2| Mus musculus BAC clone RP24-283I7 from chromosome y, complete sequence
          Length = 153678

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 18865 gatttcttttttgcctttttctgcttct 18838
to top
>emb|BX004764.8| Zebrafish DNA sequence from clone DKEY-162L4 in linkage group 3,
             complete sequence
          Length = 238651

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    atgtagcaattgtatcttgcacag 118
             ||||||||||||| ||||||||||
Sbjct: 84246 atgtagcaattgtttcttgcacag 84269
to top
>dbj|BS000085.1| Pan troglodytes chromosome 22 clone:RP43-164H01, map 22, complete
             sequences
          Length = 171357

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   cgttttttgatttcttgctt 265
             ||||||||||||||||||||
Sbjct: 62608 cgttttttgatttcttgctt 62589
to top
>dbj|AK100740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118D09, full
           insert sequence
          Length = 4244

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 168 tacaacagaattgggggaca 187
           ||||||||||||||||||||
Sbjct: 855 tacaacagaattgggggaca 874
to top
>gb|AC134599.4| Mus musculus BAC clone RP23-192O14 from 12, complete sequence
          Length = 208842

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   ttcttgcttgcctttttctg 276
             ||||||||||||||||||||
Sbjct: 90582 ttcttgcttgcctttttctg 90563
to top
>dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, section 30/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    cgttttttgatttcttgctt 265
              ||||||||||||||||||||
Sbjct: 143693 cgttttttgatttcttgctt 143674
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 168      tacaacagaattgggggaca 187
                ||||||||||||||||||||
Sbjct: 11149135 tacaacagaattgggggaca 11149116
to top
>gb|AC145575.3| Mus musculus BAC clone RP24-103M14 from Y, complete sequence
          Length = 152955

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 92300 gatttcttttttgcctttttctgcttct 92273
to top
>gb|AC140421.4| Mus musculus BAC clone RP24-441H14 from Y, complete sequence
          Length = 204088

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 254   gatttcttgcttgcctttttctgcttct 281
             ||||||||  ||||||||||||||||||
Sbjct: 99527 gatttcttttttgcctttttctgcttct 99554
to top
>gb|AC148013.3| Mus musculus BAC clone RP23-134C2 from 18, complete sequence
          Length = 192504

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    tttcttgcttgcctttttct 275
              ||||||||||||||||||||
Sbjct: 126979 tttcttgcttgcctttttct 126998
to top
>emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chromosome 17, complete
             sequence
          Length = 50643

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   tgtatcttgcacagaaactg 124
             ||||||||||||||||||||
Sbjct: 15662 tgtatcttgcacagaaactg 15643
to top
>emb|BX649554.17| Zebrafish DNA sequence from clone DKEYP-71F10 in linkage group 3,
            complete sequence
          Length = 99813

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 95   atgtagcaattgtatcttgcacag 118
            ||||||||||||| ||||||||||
Sbjct: 4303 atgtagcaattgtttcttgcacag 4280
to top
>emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chromosome 2, complete
              sequence
          Length = 208058

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    gctcgtgtggtaaaaatcca 216
              ||||||||||||||||||||
Sbjct: 108036 gctcgtgtggtaaaaatcca 108017
to top
>dbj|AP000949.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B606F19,
              LL56-APP region, complete sequence
          Length = 146670

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    cgttttttgatttcttgctt 265
              ||||||||||||||||||||
Sbjct: 146507 cgttttttgatttcttgctt 146488
to top
>dbj|AP001116.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B677J23,
            LL56-APP region, complete sequence
          Length = 93290

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  cgttttttgatttcttgctt 265
            ||||||||||||||||||||
Sbjct: 1735 cgttttttgatttcttgctt 1716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,079,536
Number of Sequences: 3902068
Number of extensions: 3079536
Number of successful extensions: 62571
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62457
Number of HSP's gapped (non-prelim): 114
length of query: 337
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 315
effective length of database: 17,147,199,772
effective search space: 5401367928180
effective search space used: 5401367928180
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top