Clone Name | rbastl15d12 |
---|---|
Clone Library Name | barley_pub |
>XYL1_ARATH (Q9S7Y7) Alpha-xylosidase precursor (EC 3.2.1.-)| Length = 915 Score = 34.7 bits (78), Expect = 0.057 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = -2 Query: 360 GEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 253 G ED E E + V +EV GLE+ +GK F M+W M I Sbjct: 881 GLED--EEENKSVMVEVRGLEMLVGKDFNMSWKMGI 914
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 31.6 bits (70), Expect = 0.48 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 17 NGRMQFHSPARLSFNG*IRVHKWCSRVTNPHTSYITDSSTMN 142 N R F P LS WCSR+T+P++++ S +N Sbjct: 600 NARNSFEDPCSLSVENENYARHWCSRLTDPNSAFSRCHSIIN 641
>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response| factor 2) (ERF-2) Length = 492 Score = 30.8 bits (68), Expect = 0.82 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 284 FPSGNSSPPTSIVTPLFSPSTASSSPWCITCASAA 388 FPSG+ PP + +PL S S +P +C+SA+ Sbjct: 263 FPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSAS 297
>ITPK1_MOUSE (Q8BYN3) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 419 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Frame = +1 Query: 28 AVPFPCKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 159 A PF CKT + S +M NQ PP + N + H+ +L+K++ Sbjct: 151 AFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVF 201
>ITPK1_BOVIN (P0C0T1) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 419 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Frame = +1 Query: 28 AVPFPCKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 159 A PF CKT + S +M NQ PP + N + H+ +L+K++ Sbjct: 151 AFPFICKTRVAHGTNSHEMAIVFNQEGLSAIQPPCVVQNFINHNAVLYKVF 201
>SLIT1_RAT (O88279) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1531 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 229 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 369 C ++ C V CHG L Q P N+ R+ L L+G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>SLIT1_MOUSE (Q80TR4) Slit homolog 1 protein precursor (Slit-1)| Length = 1531 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 229 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 369 C ++ C V CHG L Q P N+ R+ L L+G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>CB024_RAT (Q6P7B2) Protein C2orf24 homolog| Length = 408 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Frame = +2 Query: 218 AEANAARFSYASMCMFHVMVKLFPSGNSSPPTSIVTP--LFSPSTASSSPWCITCASA 385 A ++ + ASM + H + L S + SPP + P L P + P C+T S+ Sbjct: 238 AYVSSVALAVASMAVIHQSLGLSSSPSPSPPELTLVPKNLLQPCIPAPVPQCLTNVSS 295
>ITPK1_HUMAN (Q13572) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 414 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 7/49 (14%) Frame = +1 Query: 34 PFPCKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 159 PF CKT + S +M NQ PP + N + H+ +L+K++ Sbjct: 153 PFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVF 201
>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1534 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 229 CSSILLCFDVHVPCHGEALPQRQLQPANLHRHAPLLALHGVLFSLVH 369 C ++ C V CHG L Q P N+ R+ L L+G + +H Sbjct: 34 CPALCTCTGTTVDCHGTGL---QAIPKNIPRNTERLELNGNNITRIH 77
>OTX2_XENLA (Q91813) Homeobox protein OTX2 (XOTX2) (Orthodenticle 2)| (Orthodenticle-A-like protein) Length = 288 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = +2 Query: 290 SGNSSPPTSIVTPLFSPSTASSSPW 364 SG SPP+S P+ S STA S W Sbjct: 128 SGQFSPPSSTSVPVISSSTAPVSIW 152
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/85 (25%), Positives = 33/85 (38%) Frame = +1 Query: 109 HKLHNRLKHDELLFKLYKFKLDTTTTSRTKKAHADGSRGKCSSILLCFDVHVPCHGEALP 288 HK H K + K K+K + K+H DG+ S L FD LP Sbjct: 111 HKKHKNKKKKKKKEKEKKYKRQPEESESKTKSHDDGNIDLESDSFLKFDSEPSAVALELP 170 Query: 289 QRQLQPANLHRHAPLLALHGVLFSL 363 R P+ + +P + L + S+ Sbjct: 171 TRAFGPSETN-ESPAVVLEPPVVSM 194
>YBIB_ECOLI (P30177) Hypothetical protein ybiB| Length = 320 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -2 Query: 369 MHQGEEDAVEGEKRGVTMEVGGLELPLGKSFTMTWNMHI 253 +H G+ A E + V M VG PL K M W M + Sbjct: 139 LHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGV 177
>ITPK1_CHICK (Q5F480) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 407 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 7/51 (13%) Frame = +1 Query: 28 AVPFPCKTELQWVNQSSQMVFEGNQ-------PPHKLHNRLKHDELLFKLY 159 A PF CKT + S +M NQ PP + + + H+ +L+K++ Sbjct: 151 AFPFICKTRVAHGTNSHEMAIIFNQEGLKAVRPPCVIQSFINHNAVLYKVF 201
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = +2 Query: 209 QTEAEANAARFSYASM-CMFHVMVKLFPSGNSSPPTSIVTPLFSPSTASSSP 361 Q +A+A A + A + V+ G S+P TS P S ST+SS+P Sbjct: 228 QAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTP 279
>END3_YEAST (P39013) Protein END3| Length = 349 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +1 Query: 85 VFEGNQPPHKLHNRLKHDELLFKLYKFKLDTTTTSR 192 +F G +P + N++ HD++L LY KLD++ ++ Sbjct: 15 IFSGLKP---IENKVNHDQVLPILYNSKLDSSVLNK 47
>PCSK4_RAT (Q78EH2) Proprotein convertase subtilisin/kexin type 4 precursor| (EC 3.4.21.-) (PC4) (Neuroendocrine convertase 3) (NEC 3) (Prohormone convertase 3) (KEX2-like endoprotease 3) Length = 678 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +2 Query: 281 LFPS---GNSSPPTSIVTPLFSPSTASSSPWCITC 376 LFP+ G++S P ++PL + S PWC C Sbjct: 644 LFPAPHAGSASEPLQGLSPLAAILAISLGPWCCPC 678
>PCDH8_HUMAN (O95206) Protocadherin-8 precursor (Arcadlin)| Length = 1070 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 296 NSSPPTSIVTPLFSPSTASSSPWCITCASAA 388 N + P +TPL +P ++SP+ A+AA Sbjct: 348 NDNAPDIAITPLAAPGAPATSPFAAAAAAAA 378
>IF2_PORGI (Q7MXE4) Translation initiation factor IF-2| Length = 979 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = -2 Query: 351 DAVEGEKRGVTMEVG--GLELPLGKSFT 274 + +EGE G+T +G GL+LP G+ T Sbjct: 504 NVIEGEAGGITQHIGAYGLKLPSGRRIT 531
>DLDH_CANFA (P49819) Dihydrolipoyl dehydrogenase, mitochondrial precursor (EC| 1.8.1.4) (Dihydrolipoamide dehydrogenase) Length = 509 Score = 27.3 bits (59), Expect = 9.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%) Frame = +1 Query: 157 YKFKLDTTTTSRTKKAHA------DGSRGKCSSILLCFDVHVPCHG 276 +KFKL+T T TKK+ +G+ G + ++ C DV + C G Sbjct: 270 FKFKLNTKVTGATKKSDGKIDVSIEGASGGKAEVITC-DVLLVCIG 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,600,783 Number of Sequences: 219361 Number of extensions: 775989 Number of successful extensions: 2955 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2952 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)