ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance re... 31 1.1
2CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (C... 28 6.9
3WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7... 28 6.9
4MATK_PHAAD (Q9MUZ5) Maturase K (Intron maturase) 28 6.9
5HAT1_DEBHA (Q6BSQ1) Histone acetyltransferase type B catalytic s... 28 9.0

>CFTR_XENLA (P26363) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1485

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -3

Query: 231  FIIQNLCTIAFITVPTCIAALYLILASCPAILVQNQKNTEEVLQPCMWCTLELIVLNACG 52
            FI+     I F+ V    A L++I  + PAI + + +N  EV       TL +IV +   
Sbjct: 863  FILVFCLVIFFVEVAASSAWLWIIKRNAPAINMTSNENVSEVSD-----TLSVIVTHTSF 917

Query: 51   LYLRLIYV 28
             Y+  IYV
Sbjct: 918  YYVFYIYV 925



to top

>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d|
           receptor) (CD21 antigen)
          Length = 1025

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 163 YFGKLSCDPSPESEKYRGSFATVYVVHT*IDRVEC 59
           YF ++SCDP PE +  R  + ++ +V   + R  C
Sbjct: 8   YFSEISCDPPPEVKNARKPYYSLPIVPGTVLRYTC 42



to top

>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)|
           (Protein kinase with no lysine 1) (Protein kinase,
           lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 15/26 (57%), Positives = 16/26 (61%)
 Frame = +3

Query: 288 HFTAHFKPIGQPQDKLPTYLLELYSV 365
           H  AHF P+GQP   LPT LL  Y V
Sbjct: 819 HSGAHFLPVGQP---LPTPLLPQYPV 841



to top

>MATK_PHAAD (Q9MUZ5) Maturase K (Intron maturase)|
          Length = 511

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 304 KWAVKWQIMSSWLSFGFKWLKIC*IHYSKFVHHCFHNSAYL 182
           KW  KW +++ W  F   W++   IH ++  + CF    YL
Sbjct: 300 KW--KWYLINLWQYFFSFWIQPRRIHLNQLANSCFDFLGYL 338



to top

>HAT1_DEBHA (Q6BSQ1) Histone acetyltransferase type B catalytic subunit (EC|
           2.3.1.48)
          Length = 409

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 350 KKISR*LVLRLSDWFKMGGEVANHVKLAEFWFQ 252
           KKIS+ +VL +    K+GG   N  KL E+W Q
Sbjct: 226 KKISQFIVLPMYQGLKLGGRFYN--KLYEYWMQ 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,624,922
Number of Sequences: 219361
Number of extensions: 1092101
Number of successful extensions: 2435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2435
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top