ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichloroph... 30 2.0
2TFDA_RALEJ (P10088) Alpha-ketoglutarate-dependent 2,4-dichloroph... 29 3.4
3LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34) ... 28 4.5

>TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate|
           dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase)
          Length = 297

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 300 AVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 172
           A +V G     L H +    QP + Y++L A  L PS G+T F
Sbjct: 101 AREVVGNFANQLWHSDSSFQQPAARYSMLSAIVLPPSGGDTEF 143



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>TFDA_RALEJ (P10088) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate|
           dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase)
          Length = 287

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 300 AVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 172
           A +V G     L H +    QP + Y++L A  + PS G+T F
Sbjct: 101 AREVVGNFANQLWHSDSSFQQPAARYSMLSAVVVPPSGGDTEF 143



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>LOX5_MESAU (P51399) Arachidonate 5-lipoxygenase (EC 1.13.11.34)|
           (5-lipoxygenase) (5-LO)
          Length = 672

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +2

Query: 65  KRLYNLPKVLPTYSETTAVSFSRH---EK*SQERNILTIKFVLPADGKSVAANRMAYVEH 235
           KR   LP+ LP  +E    S  RH   E+  QE NI  + + L  DG  + AN+     H
Sbjct: 245 KRCRELPQKLPVTTEMVECSLERHLSLEQEVQEGNIFIVDYEL-LDG--IDANKTDPCTH 301

Query: 236 GWLA 247
            +LA
Sbjct: 302 QFLA 305


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,945,566
Number of Sequences: 219361
Number of extensions: 828807
Number of successful extensions: 1953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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