Clone Name | rbastl15d03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | OAZ_SCHOT (Q9HFU8) Ornithine decarboxylase antizyme (ODC-Az) | 28 | 6.8 | 2 | KIF4A_CHICK (Q90640) Chromosome-associated kinesin KIF4A (Chromo... | 27 | 8.9 | 3 | ABCA3_MOUSE (Q8R420) ATP-binding cassette sub-family A member 3 | 27 | 8.9 | 4 | SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven i... | 27 | 8.9 |
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>OAZ_SCHOT (Q9HFU8) Ornithine decarboxylase antizyme (ODC-Az)| Length = 224 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = -3 Query: 348 SWRSCALPYP-GDWKRQSAHEGE 283 S+R+C LP P G WK Q+A+EGE Sbjct: 92 SFRTC-LPSPSGKWKEQTANEGE 113
>KIF4A_CHICK (Q90640) Chromosome-associated kinesin KIF4A (Chromokinesin)| Length = 1225 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 233 CSSNPVYCSNQYPGYPCSPSCADCLFQSPG*GSAQDLQD 349 CS + C N+ PG+ + C D S G +DL+D Sbjct: 1108 CSCDSTKCRNRDPGFQDATVCEDQTKDSEGSFKLEDLRD 1146
>ABCA3_MOUSE (Q8R420) ATP-binding cassette sub-family A member 3| Length = 1704 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 358 FLTILEILCTSLSWRLEKAIST*RRTW 278 +LT+L ++ T+L WRL I RR W Sbjct: 1317 YLTLLFLIETNLLWRLRTFICAFRRRW 1343
>SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven in absentia| homolog 1) Length = 339 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = +2 Query: 221 PGIFCSSNPVYCSNQYPGYPCSPSC 295 P + CSS + CSN P C P+C Sbjct: 100 PYMQCSSGHLVCSNCRPKLQCCPTC 124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,575,806 Number of Sequences: 219361 Number of extensions: 1087419 Number of successful extensions: 2633 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 2532 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2631 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)