ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OAZ_SCHOT (Q9HFU8) Ornithine decarboxylase antizyme (ODC-Az) 28 6.8
2KIF4A_CHICK (Q90640) Chromosome-associated kinesin KIF4A (Chromo... 27 8.9
3ABCA3_MOUSE (Q8R420) ATP-binding cassette sub-family A member 3 27 8.9
4SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven i... 27 8.9

>OAZ_SCHOT (Q9HFU8) Ornithine decarboxylase antizyme (ODC-Az)|
          Length = 224

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 348 SWRSCALPYP-GDWKRQSAHEGE 283
           S+R+C LP P G WK Q+A+EGE
Sbjct: 92  SFRTC-LPSPSGKWKEQTANEGE 113



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>KIF4A_CHICK (Q90640) Chromosome-associated kinesin KIF4A (Chromokinesin)|
          Length = 1225

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 233  CSSNPVYCSNQYPGYPCSPSCADCLFQSPG*GSAQDLQD 349
            CS +   C N+ PG+  +  C D    S G    +DL+D
Sbjct: 1108 CSCDSTKCRNRDPGFQDATVCEDQTKDSEGSFKLEDLRD 1146



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>ABCA3_MOUSE (Q8R420) ATP-binding cassette sub-family A member 3|
          Length = 1704

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 358  FLTILEILCTSLSWRLEKAIST*RRTW 278
            +LT+L ++ T+L WRL   I   RR W
Sbjct: 1317 YLTLLFLIETNLLWRLRTFICAFRRRW 1343



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>SIA1_CAEEL (Q965X6) Ubiquitin ligase sia-1 (EC 6.3.2.-) (Seven in absentia|
           homolog 1)
          Length = 339

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 221 PGIFCSSNPVYCSNQYPGYPCSPSC 295
           P + CSS  + CSN  P   C P+C
Sbjct: 100 PYMQCSSGHLVCSNCRPKLQCCPTC 124


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,575,806
Number of Sequences: 219361
Number of extensions: 1087419
Number of successful extensions: 2633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2631
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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