>gb|AC111029.8| Mus musculus chromosome 3, clone RP23-235E15, complete sequence
          Length = 196520

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   caaggatcccaggaatatttt 233
             |||||||||||||||||||||
Sbjct: 19980 caaggatcccaggaatatttt 19960

>gb|U13071.1| Caenorhabditis elegans cosmid T22F7, complete sequence
          Length = 34794

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 140   aacattttctactactgtagccttt 164
             ||||||||||||||| |||||||||
Sbjct: 15754 aacattttctactaccgtagccttt 15730

>emb|Z99119.2|BSUB0016 Bacillus subtilis complete genome (section 16 of 21): from 3013458 to
              3213379
          Length = 199922

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 304    ccttttccagtctccaggata 324
              |||||||||||||||||||||
Sbjct: 150543 ccttttccagtctccaggata 150563

>emb|Z25795.1|BSGLYCGOP B.subtilis glycogen operon DNA
          Length = 8517

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 304  ccttttccagtctccaggata 324
            |||||||||||||||||||||
Sbjct: 7157 ccttttccagtctccaggata 7137

>gb|AC142256.4| Mus musculus BAC clone RP24-528N23 from 3, complete sequence
          Length = 183488

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   caaggatcccaggaatatttt 233
             |||||||||||||||||||||
Sbjct: 45068 caaggatcccaggaatatttt 45048

>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete
              sequence
          Length = 242530

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 278    ccatgttctccttcatgtgctgatt 302
              |||| ||||||||||||||||||||
Sbjct: 177519 ccatcttctccttcatgtgctgatt 177495

>gb|AF008220.1|AF008220 Bacillus subtilis rrnB-dnaB genomic region
          Length = 220060

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 304   ccttttccagtctccaggata 324
             |||||||||||||||||||||
Sbjct: 14166 ccttttccagtctccaggata 14146

>gb|AC147383.4| Pan troglodytes BAC clone RP43-157C2 from 7, complete sequence
          Length = 190266

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 356   gaattctacaactgatgata 375
             ||||||||||||||||||||
Sbjct: 40290 gaattctacaactgatgata 40309

>gb|AY600371.1| Homo sapiens replication factor C (activator 1) 1, 145kDa (RFC1) gene,
             complete cds
          Length = 82933

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   ttgccttttccagtctccag 320
             ||||||||||||||||||||
Sbjct: 25564 ttgccttttccagtctccag 25545

>gb|AC096775.5| Homo sapiens BAC clone RP11-350C21 from 7, complete sequence
          Length = 99452

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  gaattctacaactgatgata 375
            ||||||||||||||||||||
Sbjct: 1905 gaattctacaactgatgata 1886

>ref|XM_817514.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.3840)
           partial mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  actgaaagaattcgaacaaa 46
           ||||||||||||||||||||
Sbjct: 762 actgaaagaattcgaacaaa 781

>gb|AC078805.13| Homo sapiens 3 BAC RP11-402E20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110992

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   gatatccatgttctccttcatgtg 296
             |||||||||||||||| |||||||
Sbjct: 38193 gatatccatgttctccctcatgtg 38216

>gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, complete sequence
          Length = 194624

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   tcaaacattttctactactg 156
             ||||||||||||||||||||
Sbjct: 34073 tcaaacattttctactactg 34054

>gb|AC023135.6| Homo sapiens BAC clone RP11-488J13 from 4, complete sequence
          Length = 108885

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ttgccttttccagtctccag 320
             ||||||||||||||||||||
Sbjct: 15515 ttgccttttccagtctccag 15534

>gb|AC115069.6| Mus musculus chromosome 7, clone RP24-405B11, complete sequence
          Length = 168442

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   tgattgccttttccagtctc 317
             ||||||||||||||||||||
Sbjct: 18795 tgattgccttttccagtctc 18776

>gb|AC154799.3| Mus musculus BAC clone RP23-79K21 from chromosome 13, complete sequence
          Length = 206997

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    tattttgctcatcaaatcca 247
              ||||||||||||||||||||
Sbjct: 161497 tattttgctcatcaaatcca 161516

>gb|AC092636.3| Homo sapiens BAC clone RP11-353K11 from 2, complete sequence
          Length = 199721

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    tgccttttccagtctccagg 321
              ||||||||||||||||||||
Sbjct: 161154 tgccttttccagtctccagg 161173

>gb|AC002450.1|AC002450 Human BAC clone GS1-244B22 from 7q21-q22, complete sequence
          Length = 39779

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 gaattctacaactgatgata 375
           ||||||||||||||||||||
Sbjct: 96  gaattctacaactgatgata 115

>emb|BX545913.21| Zebrafish DNA sequence from clone DKEY-208P1 in linkage group 17,
              complete sequence
          Length = 188037

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    caggaatattttgctcatca 241
              ||||||||||||||||||||
Sbjct: 180450 caggaatattttgctcatca 180431

>emb|BX247951.11| Zebrafish DNA sequence from clone DKEY-246A16 in linkage group 18,
              complete sequence
          Length = 189723

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    tttgctcatcaaatccagta 250
              ||||||||||||||||||||
Sbjct: 187482 tttgctcatcaaatccagta 187463

>gb|AC111124.8| Mus musculus chromosome 7, clone RP23-331A21, complete sequence
          Length = 228220

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 298    tgattgccttttccagtctc 317
              ||||||||||||||||||||
Sbjct: 202792 tgattgccttttccagtctc 202773


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,271,012
Number of Sequences: 3902068
Number of extensions: 3271012
Number of successful extensions: 59111
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59077
Number of HSP's gapped (non-prelim): 34
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)