ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl15d02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_466651.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2967 Score = 42.1 bits (21), Expect = 1.2 Identities = 71/85 (83%), Gaps = 2/85 (2%) Strand = Plus / Minus Query: 91 agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 149 |||||||||||||||| | ||||| ||||||||| |||| | ||| ||||| |||||| Sbjct: 2902 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 2844 Query: 150 tatatgcaagtcatcatcttcacag 174 |||||| ||||| |||||| |||| Sbjct: 2843 tatatgaaagtccacatctttacag 2819
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.2 Identities = 71/85 (83%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 91 agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 149 |||||||||||||||| | ||||| ||||||||| |||| | ||| ||||| |||||| Sbjct: 23885985 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 23886043 Query: 150 tatatgcaagtcatcatcttcacag 174 |||||| ||||| |||||| |||| Sbjct: 23886044 tatatgaaagtccacatctttacag 23886068
>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08 Length = 163423 Score = 42.1 bits (21), Expect = 1.2 Identities = 71/85 (83%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 91 agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 149 |||||||||||||||| | ||||| ||||||||| |||| | ||| ||||| |||||| Sbjct: 107651 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 107709 Query: 150 tatatgcaagtcatcatcttcacag 174 |||||| ||||| |||||| |||| Sbjct: 107710 tatatgaaagtccacatctttacag 107734
>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0496E03 Length = 138622 Score = 42.1 bits (21), Expect = 1.2 Identities = 71/85 (83%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 91 agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 149 |||||||||||||||| | ||||| ||||||||| |||| | ||| ||||| |||||| Sbjct: 19949 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 20007 Query: 150 tatatgcaagtcatcatcttcacag 174 |||||| ||||| |||||| |||| Sbjct: 20008 tatatgaaagtccacatctttacag 20032
>dbj|AK100424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B16, full insert sequence Length = 2967 Score = 42.1 bits (21), Expect = 1.2 Identities = 71/85 (83%), Gaps = 2/85 (2%) Strand = Plus / Minus Query: 91 agcaaccagttgaaatctatgttgccgtttacctgcggatccatgag-gctgaacctaac 149 |||||||||||||||| | ||||| ||||||||| |||| | ||| ||||| |||||| Sbjct: 2902 agcaaccagttgaaatttcggttgcaatttacctgccgatcta-gagcgctgagcctaac 2844 Query: 150 tatatgcaagtcatcatcttcacag 174 |||||| ||||| |||||| |||| Sbjct: 2843 tatatgaaagtccacatctttacag 2819
>gb|AY466342.1| Litopenaeus vannamei microsatellite TUMXLV9.170 sequence Length = 692 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aacagtattttctctcccat 90 |||||||||||||||||||| Sbjct: 302 aacagtattttctctcccat 283
>gb|AC108677.4| Homo sapiens 3 BAC RP11-1P14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107650 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 caaaaacagtattttctctc 86 |||||||||||||||||||| Sbjct: 48975 caaaaacagtattttctctc 48956
>dbj|AK030271.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933440I24 product:unclassifiable, full insert sequence Length = 2394 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 gatcttataaaattctcagattgt 37 |||||||||||||||||| ||||| Sbjct: 756 gatcttataaaattctcaaattgt 733 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,035,453 Number of Sequences: 3902068 Number of extensions: 3035453 Number of successful extensions: 54622 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 54596 Number of HSP's gapped (non-prelim): 26 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
