ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HGFL_HUMAN (P26927) Hepatocyte growth factor-like protein precur... 30 1.9
2TIS1_DROME (P47980) Protein TIS11 (dTIS11) 29 5.4
3ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alph... 28 9.2

>HGFL_HUMAN (P26927) Hepatocyte growth factor-like protein precursor|
           (Macrophage stimulatory protein) (MSP)
           (Macrophage-stimulating protein) [Contains: Hepatocyte
           growth factor-like protein alpha chain; Hepatocyte
           growth factor-like protein beta chain]
          Length = 711

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 240 LPCGAHSHRLFPVNSTGETPRLFRSMQENICQNKMRSP 127
           LPC A SH+ FP N    TP L   ++EN C+N    P
Sbjct: 129 LPCQAWSHK-FP-NDHKYTPTLRNGLEENFCRNPDGDP 164



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>TIS1_DROME (P47980) Protein TIS11 (dTIS11)|
          Length = 436

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 12/42 (28%)
 Frame = -3

Query: 426 HRQQPHRLHRG------------AHQDRRHLQWRRLSPAVAS 337
           H+QQPHR H G              Q ++H Q ++  PAVAS
Sbjct: 59  HQQQPHRHHGGLTRTISQPAQLIQQQQQQHQQQQQQQPAVAS 100



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>ACH10_RAT (Q9JLB5) Neuronal acetylcholine receptor protein, alpha-10 subunit|
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 10) (NACHR alpha 10)
          Length = 447

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 408 RLHRGAHQDRRHLQWRRLSPAVASFNSSIFLC 313
           R HR A   RRH  W+RL+  +  F   IF C
Sbjct: 404 RSHRAAQ--RRHEDWKRLARVMDRFFLGIFFC 433


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,616,000
Number of Sequences: 219361
Number of extensions: 1208489
Number of successful extensions: 2895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2895
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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