Clone Name | rbastl15b12 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ggaatagctactactagtact 92 ||||||||||||||||||||| Sbjct: 10797910 ggaatagctactactagtact 10797930
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 ggaatagctactactagtact 92 ||||||||||||||||||||| Sbjct: 56977 ggaatagctactactagtact 56957
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.45 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 ggaatagctactactagtact 92 ||||||||||||||||||||| Sbjct: 10796011 ggaatagctactactagtact 10796031
>gb|AF298862.1|AF298862 Giardia intestinalis variant-specific surface protein M21-1 (M21-1) gene, partial cds Length = 1644 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 tactactagtactgcaggtc 99 |||||||||||||||||||| Sbjct: 763 tactactagtactgcaggtc 744
>ref|XM_445161.1| Candida glabrata CBS138, CAGL0B04389g partial mRNA Length = 3492 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 tctttgccattgtttctca 57 ||||||||||||||||||| Sbjct: 3158 tctttgccattgtttctca 3176
>emb|CR380948.1| Candida glabrata strain CBS138 chromosome B complete sequence Length = 502101 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 tctttgccattgtttctca 57 ||||||||||||||||||| Sbjct: 430751 tctttgccattgtttctca 430769
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 actaacgctagctagcaag 146 ||||||||||||||||||| Sbjct: 29493052 actaacgctagctagcaag 29493070
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 aatagctactactagtact 92 ||||||||||||||||||| Sbjct: 41849601 aatagctactactagtact 41849583
>dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1147A04 Length = 150053 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 aatagctactactagtact 92 ||||||||||||||||||| Sbjct: 92977 aatagctactactagtact 92959
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 128 actaacgctagctagcaag 146 ||||||||||||||||||| Sbjct: 88082 actaacgctagctagcaag 88100 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 996,043 Number of Sequences: 3902068 Number of extensions: 996043 Number of successful extensions: 61991 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61767 Number of HSP's gapped (non-prelim): 224 length of query: 147 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 126 effective length of database: 17,151,101,840 effective search space: 2161038831840 effective search space used: 2161038831840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)