ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.45
2gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 0.45
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.45
4gb|AF298862.1|AF298862 Giardia intestinalis variant-specific sur... 40 1.8
5ref|XM_445161.1| Candida glabrata CBS138, CAGL0B04389g partial mRNA 38 7.0
6emb|CR380948.1| Candida glabrata strain CBS138 chromosome B comp... 38 7.0
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
9dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0
10dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.0

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 72       ggaatagctactactagtact 92
                |||||||||||||||||||||
Sbjct: 10797910 ggaatagctactactagtact 10797930



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>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    ggaatagctactactagtact 92
             |||||||||||||||||||||
Sbjct: 56977 ggaatagctactactagtact 56957



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 72       ggaatagctactactagtact 92
                |||||||||||||||||||||
Sbjct: 10796011 ggaatagctactactagtact 10796031



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>gb|AF298862.1|AF298862 Giardia intestinalis variant-specific surface protein M21-1 (M21-1)
           gene, partial cds
          Length = 1644

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 80  tactactagtactgcaggtc 99
           ||||||||||||||||||||
Sbjct: 763 tactactagtactgcaggtc 744



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>ref|XM_445161.1| Candida glabrata CBS138, CAGL0B04389g partial mRNA
          Length = 3492

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 39   tctttgccattgtttctca 57
            |||||||||||||||||||
Sbjct: 3158 tctttgccattgtttctca 3176



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>emb|CR380948.1| Candida glabrata strain CBS138 chromosome B complete sequence
          Length = 502101

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     tctttgccattgtttctca 57
              |||||||||||||||||||
Sbjct: 430751 tctttgccattgtttctca 430769



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 128      actaacgctagctagcaag 146
                |||||||||||||||||||
Sbjct: 29493052 actaacgctagctagcaag 29493070



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 74       aatagctactactagtact 92
                |||||||||||||||||||
Sbjct: 41849601 aatagctactactagtact 41849583



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>dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1147A04
          Length = 150053

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    aatagctactactagtact 92
             |||||||||||||||||||
Sbjct: 92977 aatagctactactagtact 92959



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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1038_A06
          Length = 147836

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 128   actaacgctagctagcaag 146
             |||||||||||||||||||
Sbjct: 88082 actaacgctagctagcaag 88100


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 996,043
Number of Sequences: 3902068
Number of extensions: 996043
Number of successful extensions: 61991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61767
Number of HSP's gapped (non-prelim): 224
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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