ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000025.1| Campylobacter jejuni RM1221, complete genome 40 1.7
2gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 1.7
3emb|AL353140.13| Human DNA sequence from clone RP13-153N15 on ch... 40 1.7
4emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 40 1.7
5gb|AC112713.3| Homo sapiens BAC clone RP11-175H11 from 4, comple... 40 1.7
6gb|AC160409.6| Mus musculus 10 BAC RP23-184O11 (Roswell Park Can... 40 1.7
7gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase su... 40 1.7
8gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase su... 40 1.7
9gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase sub... 40 1.7
10gb|AC108125.4| Homo sapiens chromosome 16 clone RP11-58C22, comp... 40 1.7
11dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 1.7
12gb|AC157016.3| Mus musculus 10 BAC RP24-505M19 (Roswell Park Can... 40 1.7
13gb|AC122888.5| Mus musculus BAC clone RP23-93F11 from chromosome... 38 6.9
14gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, com... 38 6.9
15gb|AC144488.2| Gasterosteus aculeatus clone CH213-119K16, comple... 38 6.9
16gb|AC144486.2| Gasterosteus aculeatus clone CH213-169J23, comple... 38 6.9
17gb|AC108909.15| Mus musculus chromosome 3, clone RP24-245I16, co... 38 6.9
18gb|AC102902.6| Mus musculus chromosome 16, clone RP24-313G10, co... 38 6.9
19gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complet... 38 6.9
20emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 o... 38 6.9
21emb|AL590244.5| Human DNA sequence from clone RP11-28H17 on chro... 38 6.9
22emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chr... 38 6.9
23gb|AC087880.24| Homo sapiens 12q BAC RP11-121J20 (Roswell Park C... 38 6.9
24emb|AL161499.2|ATCHRIV11 Arabidopsis thaliana DNA chromosome 4, ... 38 6.9
25gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complet... 38 6.9
26gb|AC087892.16| Homo sapiens 12q BAC RP11-3L23 (Roswell Park Can... 38 6.9
27emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 ... 38 6.9
28gb|AC091826.3| Homo sapiens chromosome 5 clone CTC-498M16, compl... 38 6.9
29dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.9
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.9
31gb|AC110807.3| Homo sapiens BAC clone RP11-745F5 from 2, complet... 38 6.9
32gb|AC068537.5| Homo sapiens BAC clone RP11-138C13 from 2, comple... 38 6.9
33gb|AC008526.5|AC008526 Homo sapiens chromosome 5 clone CTC-470C1... 38 6.9
34dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic D... 38 6.9
35dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.9
36dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.9
37gb|AE000657.1| Aquifex aeolicus VF5, complete genome 38 6.9
38gb|AF076274.1|T27D20 Arabidopsis thaliana BAC T27D20 38 6.9
39emb|AL670305.7| Mouse DNA sequence from clone RP23-225G17 on chr... 38 6.9 
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome
          Length = 1777831

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    tttaagctctataaatttaa 142
              ||||||||||||||||||||
Sbjct: 798940 tttaagctctataaatttaa 798959
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 119     actttttaagctctataaat 138
               ||||||||||||||||||||
Sbjct: 1103611 actttttaagctctataaat 1103630
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>emb|AL353140.13| Human DNA sequence from clone RP13-153N15 on chromosome X Contains the 3'
              end of a anovel gene, complete sequence
          Length = 174196

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      gtttcattcccctgcaaaac 25
              ||||||||||||||||||||
Sbjct: 125612 gtttcattcccctgcaaaac 125593
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>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
             3/6
          Length = 317511

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   tttaagctctataaatttaa 142
             ||||||||||||||||||||
Sbjct: 97835 tttaagctctataaatttaa 97854
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>gb|AC112713.3| Homo sapiens BAC clone RP11-175H11 from 4, complete sequence
          Length = 114398

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    catagttcacaaatggtgtt 64
             ||||||||||||||||||||
Sbjct: 27002 catagttcacaaatggtgtt 26983
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>gb|AC160409.6| Mus musculus 10 BAC RP23-184O11 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209766

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     cattcccctgcaaaactgag 29
              ||||||||||||||||||||
Sbjct: 128391 cattcccctgcaaaactgag 128372
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>gb|AY232508.1| Donacia japana isolate N264 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ttttaagctctataaattta 141
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AY232507.1| Donacia japana isolate N119 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ttttaagctctataaattta 141
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AY232506.1| Donacia japana isolate N79 cytochrome oxidase subunit I gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 750

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ttttaagctctataaattta 141
           ||||||||||||||||||||
Sbjct: 645 ttttaagctctataaattta 664
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>gb|AC108125.4| Homo sapiens chromosome 16 clone RP11-58C22, complete sequence
          Length = 153746

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    tgaatcatagttcacaaatg 59
             ||||||||||||||||||||
Sbjct: 64303 tgaatcatagttcacaaatg 64284
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>dbj|AB005236.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK22
          Length = 82035

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tactttttaagctctataaa 137
             ||||||||||||||||||||
Sbjct: 24387 tactttttaagctctataaa 24368
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>gb|AC157016.3| Mus musculus 10 BAC RP24-505M19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 168538

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     cattcccctgcaaaactgag 29
              ||||||||||||||||||||
Sbjct: 123754 cattcccctgcaaaactgag 123735
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>gb|AC122888.5| Mus musculus BAC clone RP23-93F11 from chromosome 3, complete sequence
          Length = 206760

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     tcatagttcacaaatggtg 62
              |||||||||||||||||||
Sbjct: 139985 tcatagttcacaaatggtg 139967
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>gb|AC102638.13| Mus musculus chromosome 3, clone RP23-406D2, complete sequence
          Length = 172817

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 114    gaactactttttaagctctataaattt 140
              |||||||||||||| ||||| ||||||
Sbjct: 127645 gaactactttttaatctctaaaaattt 127619
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>gb|AC144488.2| Gasterosteus aculeatus clone CH213-119K16, complete sequence
          Length = 217665

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 83    acacaagttacataaccgactca 105
             ||||||||||||||||| |||||
Sbjct: 21788 acacaagttacataacctactca 21766
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>gb|AC144486.2| Gasterosteus aculeatus clone CH213-169J23, complete sequence
          Length = 157502

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 83    acacaagttacataaccgactca 105
             ||||||||||||||||| |||||
Sbjct: 26046 acacaagttacataacctactca 26068
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>gb|AC108909.15| Mus musculus chromosome 3, clone RP24-245I16, complete sequence
          Length = 194252

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    tcatagttcacaaatggtg 62
             |||||||||||||||||||
Sbjct: 15178 tcatagttcacaaatggtg 15160
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>gb|AC102902.6| Mus musculus chromosome 16, clone RP24-313G10, complete sequence
          Length = 122431

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 103    tcaagcacgatgaactacttttt 125
              |||||||||||| ||||||||||
Sbjct: 102893 tcaagcacgatgtactacttttt 102871
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>gb|AC144485.2| Gasterosteus aculeatus clone CH213-101E8, complete sequence
          Length = 203829

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 83     acacaagttacataaccgactca 105
              ||||||||||||||||| |||||
Sbjct: 178512 acacaagttacataacctactca 178534
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>emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 on chromosome 6q16.3-21
             Contains a novel gene and a chromatin assembly factor 1
             p60 subunit (CHAF1B) pseudogene, complete sequence
          Length = 136299

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 121   tttttaagctctataaatt 139
             |||||||||||||||||||
Sbjct: 41749 tttttaagctctataaatt 41731
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>emb|AL590244.5| Human DNA sequence from clone RP11-28H17 on chromosome 6 Contains  the
             3' end of a novel gene, part of a novel gene,  a novel
             gene, cytochrome P450 pseudogene and the 3' end of the
             RHAG gene for Rhesus blood group-associated glycoprotein
             (RH50A), complete sequence
          Length = 133579

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    tagttcacaaatggtgttc 65
             |||||||||||||||||||
Sbjct: 86410 tagttcacaaatggtgttc 86392
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>emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chromosome 6q25.1-25.3
             Contains a high mobility group (nonhistone chromosomal)
             protein 4 (HMG4) pseudogene, complete sequence
          Length = 156667

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 118   tactttttaagctctataaattt 140
             |||||||||||||||| ||||||
Sbjct: 75796 tactttttaagctctacaaattt 75774
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>gb|AC087880.24| Homo sapiens 12q BAC RP11-121J20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 188361

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    tcccctgcaaaactgagct 31
             |||||||||||||||||||
Sbjct: 12321 tcccctgcaaaactgagct 12303
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>emb|AL161499.2|ATCHRIV11 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 11
          Length = 198022

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    actttttaagctctataaa 137
              |||||||||||||||||||
Sbjct: 190059 actttttaagctctataaa 190077
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>gb|AC144487.1| Gasterosteus aculeatus clone CH213-160O9, complete sequence
          Length = 181162

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 83     acacaagttacataaccgactca 105
              ||||||||||||||||| |||||
Sbjct: 160918 acacaagttacataacctactca 160896
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>gb|AC087892.16| Homo sapiens 12q BAC RP11-3L23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 123004

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    tcccctgcaaaactgagct 31
             |||||||||||||||||||
Sbjct: 61842 tcccctgcaaaactgagct 61824
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>emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 in linkage group 5,
              complete sequence
          Length = 160405

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    actttttaagctctataaa 137
              |||||||||||||||||||
Sbjct: 144635 actttttaagctctataaa 144653
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>gb|AC091826.3| Homo sapiens chromosome 5 clone CTC-498M16, complete sequence
          Length = 133498

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     aaatggtgttcgagggtaa 73
              |||||||||||||||||||
Sbjct: 116518 aaatggtgttcgagggtaa 116500
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 123      tttaagctctataaattta 141
                |||||||||||||||||||
Sbjct: 28397809 tttaagctctataaattta 28397827
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 118     tactttttaagctctataa 136
               |||||||||||||||||||
Sbjct: 4611684 tactttttaagctctataa 4611702
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>gb|AC110807.3| Homo sapiens BAC clone RP11-745F5 from 2, complete sequence
          Length = 124489

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    tgcaaaactgagcttcaat 36
             |||||||||||||||||||
Sbjct: 63865 tgcaaaactgagcttcaat 63847
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>gb|AC068537.5| Homo sapiens BAC clone RP11-138C13 from 2, complete sequence
          Length = 133787

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    tgcaaaactgagcttcaat 36
             |||||||||||||||||||
Sbjct: 39576 tgcaaaactgagcttcaat 39558
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>gb|AC008526.5|AC008526 Homo sapiens chromosome 5 clone CTC-470C15, complete sequence
          Length = 168243

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 55   aaatggtgttcgagggtaa 73
            |||||||||||||||||||
Sbjct: 8105 aaatggtgttcgagggtaa 8087
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>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1148_D05
          Length = 155146

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   tttaagctctataaattta 141
             |||||||||||||||||||
Sbjct: 21930 tttaagctctataaattta 21948
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>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0695A04
          Length = 158133

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 118   tactttttaagctctataa 136
             |||||||||||||||||||
Sbjct: 18900 tactttttaagctctataa 18918
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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F03
          Length = 149699

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 118    tactttttaagctctataa 136
              |||||||||||||||||||
Sbjct: 146371 tactttttaagctctataa 146389
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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 113    tgaactactttttaagctc 131
              |||||||||||||||||||
Sbjct: 432086 tgaactactttttaagctc 432068
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>gb|AF076274.1|T27D20 Arabidopsis thaliana BAC T27D20
          Length = 80446

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 119  actttttaagctctataaa 137
            |||||||||||||||||||
Sbjct: 7622 actttttaagctctataaa 7604
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>emb|AL670305.7| Mouse DNA sequence from clone RP23-225G17 on chromosome X, complete
             sequence
          Length = 172171

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 122   ttttaagctctataaattt 140
             |||||||||||||||||||
Sbjct: 10688 ttttaagctctataaattt 10706


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,246,566
Number of Sequences: 3902068
Number of extensions: 1246566
Number of successful extensions: 84622
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84456
Number of HSP's gapped (non-prelim): 166
length of query: 144
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 123
effective length of database: 17,151,101,840
effective search space: 2109585526320
effective search space used: 2109585526320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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