>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 188      aatggatgctcgtcaatttacaagctgca 216
                |||||| ||||||||||||||||||||||
Sbjct: 12443255 aatggaagctcgtcaatttacaagctgca 12443227

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14,
              complete sequence
          Length = 132560

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 188    aatggatgctcgtcaatttacaagctgca 216
              |||||| ||||||||||||||||||||||
Sbjct: 100937 aatggaagctcgtcaatttacaagctgca 100909

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 188      aatggatgctcgtcaatttacaagctgca 216
                |||||| ||||||||||||||||||||||
Sbjct: 12440018 aatggaagctcgtcaatttacaagctgca 12439990

>dbj|AK068503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153C08, full
            insert sequence
          Length = 3677

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 188  aatggatgctcgtcaatttacaagctgca 216
            |||||| ||||||||||||||||||||||
Sbjct: 3453 aatggaagctcgtcaatttacaagctgca 3425

>gb|AC110102.6| Rattus norvegicus 4 BAC CH230-209C7 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 219273

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 71     gattacattttctgggtattga 92
              ||||||||||||||||||||||
Sbjct: 159657 gattacattttctgggtattga 159636

>gb|AC087102.3| Rattus norvegicus strain Brown Norway clone RP31-331N5, complete
             sequence
          Length = 151673

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 71    gattacattttctgggtattga 92
             ||||||||||||||||||||||
Sbjct: 77271 gattacattttctgggtattga 77292

>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 71     gattacattttctgggtattga 92
              ||||||||||||||||||||||
Sbjct: 283519 gattacattttctgggtattga 283540

>gb|AC145922.2| Pan troglodytes BAC clone RP43-10M11 from 7, complete sequence
          Length = 190867

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 332    attttctgtaaataattgttttata 356
              |||||||||||| ||||||||||||
Sbjct: 114778 attttctgtaaagaattgttttata 114754

>gb|AC146177.3| Pan troglodytes BAC clone RP43-35P5 from 7, complete sequence
          Length = 156281

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 332    attttctgtaaataattgttttata 356
              |||||||||||| ||||||||||||
Sbjct: 105923 attttctgtaaagaattgttttata 105947

>gb|AC005048.2| Homo sapiens BAC clone CTB-15P3 from 7, complete sequence
          Length = 125290

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 332    attttctgtaaataattgttttata 356
              |||||||||||| ||||||||||||
Sbjct: 115316 attttctgtaaagaattgttttata 115340

>gb|AF172277.1|AF172277 Homo sapiens 7q31 clones RP11-267O17 and RP11-256L2 including NRCAM and
              LAMB1R genes, complete sequence
          Length = 227054

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 332    attttctgtaaataattgttttata 356
              |||||||||||| ||||||||||||
Sbjct: 174333 attttctgtaaagaattgttttata 174309

>gb|AC009457.8|AC009457 Drosophila melanogaster, chromosome 3R, region 88E-88E, BAC clone
           BACR25A06, complete sequence
          Length = 170163

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 88  attgaagaaagccgcacttgc 108
           |||||||||||||||||||||
Sbjct: 528 attgaagaaagccgcacttgc 548

>gb|AC005721.3|AC005721 Drosophila melanogaster, chromosome 3R, region 88D8-88E1, BAC clone
              BACR48E23, complete sequence
          Length = 203183

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 88     attgaagaaagccgcacttgc 108
              |||||||||||||||||||||
Sbjct: 140736 attgaagaaagccgcacttgc 140756

>gb|AE003707.2| Drosophila melanogaster chromosome 3R, section 45 of 118 of the
            complete sequence
          Length = 228284

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 88   attgaagaaagccgcacttgc 108
            |||||||||||||||||||||
Sbjct: 6369 attgaagaaagccgcacttgc 6389

>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     atttacaagctgcagaccaa 222
               ||||||||||||||||||||
Sbjct: 3280524 atttacaagctgcagaccaa 3280505

>gb|AC158220.4| Mus musculus chromosome 7, clone RP23-278M8, complete sequence
          Length = 189304

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  cttggtggaggcagccacac 325
            ||||||||||||||||||||
Sbjct: 4717 cttggtggaggcagccacac 4736

>ref|XM_447981.1| Candida glabrata CBS138, CAGL0J06314g partial mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 taaataattgttttatatca 359
           ||||||||||||||||||||
Sbjct: 811 taaataattgttttatatca 792

>gb|AC122298.3| Mus musculus BAC clone RP23-269A11 from 12, complete sequence
          Length = 151332

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     acattttctgggtattgaag 94
              ||||||||||||||||||||
Sbjct: 145729 acattttctgggtattgaag 145748

>ref|XM_774519.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_81_139637_136254) partial mRNA
          Length = 3384

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 241 ttgtggaagattttctgtagatga 264
           ||||||||||||||||||| ||||
Sbjct: 368 ttgtggaagattttctgtacatga 391

>emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chromosome 6q25.1-25.3
             Contains a high mobility group (nonhistone chromosomal)
             protein 4 (HMG4) pseudogene, complete sequence
          Length = 156667

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    cattttctgggtattgaaga 95
             ||||||||||||||||||||
Sbjct: 70724 cattttctgggtattgaaga 70743

>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 340    taaataattgttttatatca 359
              ||||||||||||||||||||
Sbjct: 599213 taaataattgttttatatca 599232

>gb|AC171368.3| Cavia porcellus clone CH234-176E17, complete sequence
          Length = 179405

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 334    tttctgtaaataattgttttatat 357
              ||||||| ||||||||||||||||
Sbjct: 139645 tttctgttaataattgttttatat 139668

>gb|AC148986.5| Mus musculus BAC clone RP23-89A16 from chromosome 7, complete sequence
          Length = 243039

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   cttggtggaggcagccacac 325
             ||||||||||||||||||||
Sbjct: 50019 cttggtggaggcagccacac 50000

>gb|AC159625.2| Mus musculus BAC clone RP24-262L7 from chromosome 12, complete sequence
          Length = 189979

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    tggaagattttctgtagatg 263
              ||||||||||||||||||||
Sbjct: 177078 tggaagattttctgtagatg 177097

>gb|AC140285.4| Mus musculus BAC clone RP24-559A5 from chromosome 12, complete sequence
          Length = 170917

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    acattttctgggtattgaag 94
             ||||||||||||||||||||
Sbjct: 37590 acattttctgggtattgaag 37609

>gb|U28409.1| Caenorhabditis elegans cosmid T25D10, complete sequence
          Length = 14417

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  tttctgtaaataattgtttt 353
            ||||||||||||||||||||
Sbjct: 9169 tttctgtaaataattgtttt 9150

>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence
          Length = 185452

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    cacacaacatgattttctgt 340
              ||||||||||||||||||||
Sbjct: 156276 cacacaacatgattttctgt 156257

>emb|AL133372.4|CNS01DUX Human chromosome 14 DNA sequence BAC R-269C4 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 190910

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 338   tgtaaataattgttttatat 357
             ||||||||||||||||||||
Sbjct: 74761 tgtaaataattgttttatat 74742

>gb|AC161242.2| Mus musculus BAC clone RP24-200E4 from chromosome 12, complete sequence
          Length = 179665

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 244   tggaagattttctgtagatg 263
             ||||||||||||||||||||
Sbjct: 95063 tggaagattttctgtagatg 95082

>gb|AC141883.4| Mus musculus BAC clone RP24-128P19 from 7, complete sequence
          Length = 189828

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    cttggtggaggcagccacac 325
              ||||||||||||||||||||
Sbjct: 102543 cttggtggaggcagccacac 102524


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,902,577
Number of Sequences: 3902068
Number of extensions: 3902577
Number of successful extensions: 77880
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77771
Number of HSP's gapped (non-prelim): 109
length of query: 360
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 338
effective length of database: 17,147,199,772
effective search space: 5795753522936
effective search space used: 5795753522936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)