Clone Name | rbastl15b05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC171681.1| Mus musculus BAC clone RP24-530O2 from chromosome 14, complete sequence Length = 198038 Score = 46.1 bits (23), Expect = 0.073 Identities = 23/23 (100%) Strand = Plus / Minus Query: 201 atagacaaaaatgcacttactgt 223 ||||||||||||||||||||||| Sbjct: 134150 atagacaaaaatgcacttactgt 134128
>ref|XM_720915.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05538) partial mRNA Length = 2032 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 aataaagtttctaaacataaa 76 ||||||||||||||||||||| Sbjct: 1329 aataaagtttctaaacataaa 1309
>gb|AC026445.5| Homo sapiens chromosome 5 clone CTD-2306M10, complete sequence Length = 113087 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 agatctgcagcttcctgtctg 256 ||||||||||||||||||||| Sbjct: 41071 agatctgcagcttcctgtctg 41091
>emb|BX248129.5| Zebrafish DNA sequence from clone CH211-196M16 in linkage group 17, complete sequence Length = 217707 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 aaagtttctaaacataaacat 79 ||||||||||||||||||||| Sbjct: 82809 aaagtttctaaacataaacat 82829
>gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromosome unknown, complete sequence Length = 168372 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 aaaataaagtttctaaacata 74 ||||||||||||||||||||| Sbjct: 94614 aaaataaagtttctaaacata 94594
>gb|BC059758.1| Xenopus tropicalis hypothetical protein MGC75823, mRNA (cDNA clone MGC:75823 IMAGE:5382465), complete cds Length = 1251 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gggagggggatatatatata 338 |||||||||||||||||||| Sbjct: 693 gggagggggatatatatata 674
>gb|AC147068.3| Pan troglodytes BAC clone RP43-165E11 from 7, complete sequence Length = 177119 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aggaaaccaaacacacaagg 167 |||||||||||||||||||| Sbjct: 73553 aggaaaccaaacacacaagg 73572
>gb|AC146089.2| Pan troglodytes BAC clone RP43-47D18 from 7, complete sequence Length = 178573 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 aggaaaccaaacacacaagg 167 |||||||||||||||||||| Sbjct: 178181 aggaaaccaaacacacaagg 178162
>emb|CR388163.10| Zebrafish DNA sequence from clone CH211-247L8 in linkage group 15, complete sequence Length = 182247 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 caaaaatgcacttactgtagggct 229 ||||||| |||||||||||||||| Sbjct: 1062 caaaaatccacttactgtagggct 1085
>ref|XM_741071.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000007.04.0) partial mRNA Length = 5178 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aataaagtttctaaacataa 75 |||||||||||||||||||| Sbjct: 4586 aataaagtttctaaacataa 4567
>gb|AC151469.2| Xenopus tropicalis clone ISB1-81I4, complete sequence Length = 41906 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gggagggggatatatatata 338 |||||||||||||||||||| Sbjct: 30713 gggagggggatatatatata 30694
>gb|AC068712.6|AC068712 Homo sapiens chromosome 15 clone CTD-3203H14 map 15q21.3, complete sequence Length = 176645 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ggccaactcaacaaaaggctttga 194 ||||| |||||||||||||||||| Sbjct: 15691 ggccatctcaacaaaaggctttga 15668
>gb|AC011306.9| Homo sapiens BAC clone RP11-479N15 from 2, complete sequence Length = 170101 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 gagaacaccaacataccaaggaaa 153 |||||||| ||||||||||||||| Sbjct: 12164 gagaacacaaacataccaaggaaa 12141
>gb|AC009362.8|AC009362 Homo sapiens chromosome 7 clone RP11-256C6, complete sequence Length = 160156 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 aggaaaccaaacacacaagg 167 |||||||||||||||||||| Sbjct: 117031 aggaaaccaaacacacaagg 117050
>gb|AC044791.6|AC044791 Homo sapiens chromosome 15 clone RP11-209E8 map 15q21, complete sequence Length = 171245 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 ggccaactcaacaaaaggctttga 194 ||||| |||||||||||||||||| Sbjct: 57741 ggccatctcaacaaaaggctttga 57718
>ref|NM_203554.1| Xenopus tropicalis hypothetical protein MGC75823 (MGC75823), mRNA Length = 1251 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gggagggggatatatatata 338 |||||||||||||||||||| Sbjct: 693 gggagggggatatatatata 674
>gb|AC005994.2|AC005994 Homo sapiens PAC clone RP6-116J24 from 14, complete sequence Length = 91388 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 aataaagtttctaaacataaacat 79 ||||||||||| |||||||||||| Sbjct: 25928 aataaagtttcaaaacataaacat 25951
>emb|CR855815.1| Xenopus tropicalis finished cDNA, clone TTpA010o03 Length = 1150 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gggagggggatatatatata 338 |||||||||||||||||||| Sbjct: 621 gggagggggatatatatata 602
>dbj|AP002886.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1133J7, complete sequences Length = 168406 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ctaaacataaacatctctaa 85 |||||||||||||||||||| Sbjct: 116700 ctaaacataaacatctctaa 116681
>gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complete sequence Length = 216389 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 agtgatctaagaaaataaag 62 |||||||||||||||||||| Sbjct: 78386 agtgatctaagaaaataaag 78367
>emb|CR626909.11| Zebrafish DNA sequence from clone DKEY-78D3 in linkage group 15, complete sequence Length = 96878 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 caaaaatgcacttactgtagggct 229 ||||||| |||||||||||||||| Sbjct: 95940 caaaaatccacttactgtagggct 95963
>emb|AL772291.9| Mouse DNA sequence from clone RP23-395G1 on chromosome 4, complete sequence Length = 222046 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aagaaaataaagtttctaaa 70 |||||||||||||||||||| Sbjct: 30214 aagaaaataaagtttctaaa 30195
>emb|AL805970.8| Mouse DNA sequence from clone RP23-438O3 on chromosome 4, complete sequence Length = 180421 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttgacacttgatagacaaaa 210 |||||||||||||||||||| Sbjct: 146707 ttgacacttgatagacaaaa 146688 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,931,342 Number of Sequences: 3902068 Number of extensions: 12931342 Number of successful extensions: 88453 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88412 Number of HSP's gapped (non-prelim): 41 length of query: 342 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 320 effective length of database: 17,147,199,772 effective search space: 5487103927040 effective search space used: 5487103927040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)