ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08,... 44 0.28
2gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 42 1.1
3gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 42 1.1
4gb|AC007696.5|AC007696 Drosophila melanogaster, chromosome 2L, r... 42 1.1
5gb|AE003620.3| Drosophila melanogaster chromosome 2L, section 29... 42 1.1
6gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 42 1.1
7gb|AC004532.1|AC004532 Drosophila melanogaster DNA sequence (P1s... 42 1.1
8gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 4.3
9gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete se... 40 4.3
10gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete se... 40 4.3
11emb|BX005385.13| Zebrafish DNA sequence from clone DKEY-180N16, ... 40 4.3
12ref|XM_696273.1| PREDICTED: Danio rerio similar to doublecortin ... 40 4.3
13emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, com... 40 4.3
14gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, r... 40 4.3
15dbj|AK015671.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.3
16gb|AY109011.1| Zea mays PCO078615 mRNA sequence 40 4.3
17gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 ... 40 4.3
18gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complet... 40 4.3
19gb|AC003121.1|AC003121 Drosophila melanogaster (P1 DS00329 (D89)... 40 4.3

>gb|AC155344.1| Brassica rapa subsp. pekinensis clone KBrH080A08, complete sequence
          Length = 110038

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 92    tttgtttgcatttacgtttgcgtttc 117
             ||||||||||||||| ||||||||||
Sbjct: 46436 tttgtttgcatttacatttgcgtttc 46411



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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     taccgtttacagtaacaccgt 89
              |||||||||||||||||||||
Sbjct: 615110 taccgtttacagtaacaccgt 615090



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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     taccgtttacagtaacaccgt 89
              |||||||||||||||||||||
Sbjct: 615153 taccgtttacagtaacaccgt 615133



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>gb|AC007696.5|AC007696 Drosophila melanogaster, chromosome 2L, region 28B, BAC clone BACR14I17,
              complete sequence
          Length = 157948

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 95     gtttgcatttacgtttgcgtttcat 119
              ||||||||| |||||||||||||||
Sbjct: 145441 gtttgcattcacgtttgcgtttcat 145465



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>gb|AE003620.3| Drosophila melanogaster chromosome 2L, section 29 of 83 of the complete
              sequence
          Length = 251142

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 95     gtttgcatttacgtttgcgtttcat 119
              ||||||||| |||||||||||||||
Sbjct: 123173 gtttgcattcacgtttgcgtttcat 123197



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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     taccgtttacagtaacaccgt 89
              |||||||||||||||||||||
Sbjct: 615110 taccgtttacagtaacaccgt 615090



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>gb|AC004532.1|AC004532 Drosophila melanogaster DNA sequence (P1s DS03465 (D149) and DS08544
             (D187)), complete sequence
          Length = 90736

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 95    gtttgcatttacgtttgcgtttcat 119
             ||||||||| |||||||||||||||
Sbjct: 42457 gtttgcattcacgtttgcgtttcat 42481



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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     tacagtaacaccgtcatttg 95
              ||||||||||||||||||||
Sbjct: 776397 tacagtaacaccgtcatttg 776378



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>gb|AC149293.21| Medicago truncatula clone mth2-78c5, complete sequence
          Length = 111412

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    gtttcattttttgacacaaa 132
              ||||||||||||||||||||
Sbjct: 106879 gtttcattttttgacacaaa 106898



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>gb|AC147780.10| Medicago truncatula clone mth2-36n9, complete sequence
          Length = 102831

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   gtttcattttttgacacaaa 132
             ||||||||||||||||||||
Sbjct: 70316 gtttcattttttgacacaaa 70335



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>emb|BX005385.13| Zebrafish DNA sequence from clone DKEY-180N16, complete sequence
          Length = 159174

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   ttaatgttacacttcagaaa 46
            ||||||||||||||||||||
Sbjct: 7156 ttaatgttacacttcagaaa 7137



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>ref|XM_696273.1| PREDICTED: Danio rerio similar to doublecortin and CaM kinase-like 2
            (LOC572548), mRNA
          Length = 1348

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   ttaatgttacacttcagaaa 46
            ||||||||||||||||||||
Sbjct: 1250 ttaatgttacacttcagaaa 1269



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>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 107   gtttgcgtttcattttttgacaca 130
             ||||||||||||| ||||||||||
Sbjct: 45814 gtttgcgtttcatattttgacaca 45791



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>gb|AC092221.1|AC092221 Drosophila melanogaster, chromosome 2L, region 22A-22C, BAC clone
              BACR16D07, complete sequence
          Length = 170868

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 87     cgtcatttgtttgcatttacgttt 110
              |||||||||||| |||||||||||
Sbjct: 112114 cgtcatttgtttccatttacgttt 112091



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>dbj|AK015671.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930500N06 product:hypothetical protein,
           full insert sequence
          Length = 847

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 132 acacgtccttaatacagagacaaaacct 159
           |||||||  |||||||||||||||||||
Sbjct: 219 acacgtcgataatacagagacaaaacct 246



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>gb|AY109011.1| Zea mays PCO078615 mRNA sequence
          Length = 1368

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 200 tgcattccatatcaaagcaa 219
           ||||||||||||||||||||
Sbjct: 548 tgcattccatatcaaagcaa 529



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>gb|AE003586.3| Drosophila melanogaster chromosome 2L, section 5 of 83 of the complete
              sequence
          Length = 306696

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 87     cgtcatttgtttgcatttacgttt 110
              |||||||||||| |||||||||||
Sbjct: 184985 cgtcatttgtttccatttacgttt 184962



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>gb|AC132574.3| Mus musculus BAC clone RP24-421H8 from 1, complete sequence
          Length = 173036

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    caaacttcagctccacctgc 281
              ||||||||||||||||||||
Sbjct: 126753 caaacttcagctccacctgc 126772



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>gb|AC003121.1|AC003121 Drosophila melanogaster (P1 DS00329 (D89)) DNA sequence, complete
             sequence
          Length = 69822

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 87    cgtcatttgtttgcatttacgttt 110
             |||||||||||| |||||||||||
Sbjct: 26873 cgtcatttgtttccatttacgttt 26896


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,911,934
Number of Sequences: 3902068
Number of extensions: 2911934
Number of successful extensions: 49854
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49755
Number of HSP's gapped (non-prelim): 99
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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