>IF39_TOBAC (P56821) Eukaryotic translation initiation factor 3 subunit 9|
           (eIF-3 eta) (eIF3 p110) (eIF3b)
          Length = 719

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 316 AVGMFRDLDCFTKGPEVCAERACREDVPGTNLEDLRSDLELRSE 447
           AV MF D++ F K P+  A    +  VPG NL+   +D + R +
Sbjct: 141 AVNMFDDIERFLKVPDEWAPPEIKPYVPGENLQQWLTDEKARDQ 184

>SYI2_BURMA (Q62CD5) Isoleucyl-tRNA synthetase 2 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 2) (IleRS 2)
          Length = 967

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 415 LPGWCLAHLHGMPVLHILQALW*SSPGPGTCQR--QRWALDQGNVRVLDFLR 266
           +PGW     HGMP+ H ++ L      P   QR  + +A +Q   +  DFLR
Sbjct: 92  IPGW---DCHGMPIEHRIEQLHGRGLPPAAVQRLCREYAFEQTERQRRDFLR 140

>SUMF1_MOUSE (Q8R0F3) Sulfatase-modifying factor 1 precursor|
           (C-alpha-formyglycine-generating enzyme 1)
          Length = 372

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -1

Query: 330 EHANGSAGL*TRGMCGCWTSCEANSDGGKIAVNHLSRAASQPRL 199
           E   G+A L   G CGC T   A + G   A    SR A+ P L
Sbjct: 36  EAREGAASL--AGSCGCGTPQRAGAHGSSAAAQRYSREANAPGL 77

>NSR1_PSEAE (Q9HYL3) Regulatory protein nosR|
          Length = 715

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = -1

Query: 396 HIFTACPFCTYFRPFGEAVQVPEHANGSAGL*TRGMCG-----CWTSCE--ANSDGGKIA 238
           ++FT   +C Y  P G A+ +P  A     L  R  CG     C   CE  A    G+I 
Sbjct: 610 NLFTRKVYCRYLCPLGAALAIPAKARLFDWLKRRAECGRPCQLCARECEIQAIHPDGRIE 669

Query: 237 VN 232
            N
Sbjct: 670 AN 671

>FINC_XENLA (Q91740) Fibronectin precursor (FN)|
          Length = 2481

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 404  VPGTSSRHARSAHTSGPLVKQS--RSRNMPTAALGSRPGECAGAGLPAKQIQME 249
            +PG++ +   S H  G L+++   RS   PT A+  RPG+ A    P +++ +E
Sbjct: 2126 LPGSNGQQPSSDH-EGQLIEEHGFRSPLAPTTAVPVRPGKFAPGRYPQERVDIE 2178

>BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain 2A (Transcription|
            termination factor I-interacting protein 5)
            (TTF-I-interacting protein 5) (Tip5)
          Length = 1850

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 248  PPSEFASQEVQHPHIPLV*SPALPLACSGTW 340
            PPS+F  Q  QH    L   P  P  CSG W
Sbjct: 1357 PPSKFFKQVEQHYLTQLTAQPIPPEMCSGWW 1387

>PDE1_CAEEL (O18696) Probable 3',5'-cyclic phosphodiesterase pde-1 (EC|
           3.1.4.17)
          Length = 664

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 236 TAIFPPSEFASQEVQHPHIPLV*SPALPLACSGTWTASPKGLKYVQNGHAVK 391
           T IF    F  Q+V    IP   +  +   C  TW+ SP  L  V  GHA+K
Sbjct: 242 TGIFFEKLFRKQQVVQCPIPPEIAELMKEVC--TWSFSPFQLNEVSEGHALK 291

>WN10A_MOUSE (P70701) Protein Wnt-10a precursor|
          Length = 417

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 268 AGSPAPAH-SPGLEPSAAVGMFRDLDCFTKGPEVCAERACREDVPGT 405
           AG+P+PA  +PGL   A+     DL  F K P+ C ER  R D  GT
Sbjct: 315 AGAPSPAPGTPGLRRRAS---HSDLVYFEKSPDFC-EREPRLDSAGT 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,894,141
Number of Sequences: 219361
Number of extensions: 1505205
Number of successful extensions: 3792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3792
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)