ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl15a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467429.1| Oryza sativa (japonica cultivar-group), mRNA 70 5e-09
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
3dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
4dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
5dbj|AK100997.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 5e-09
6gb|AC116605.1| Homo sapiens chromosome 5 clone RP11-443O6, compl... 46 0.078
7gb|AC106811.2| Homo sapiens chromosome 5 clone RP11-551B15, comp... 46 0.078
8gb|AY458646.2| Uncultured bacterium 578 clone EBAC080-L31E09 gen... 42 1.2
9emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in... 42 1.2
10gb|AC153837.4| Mus musculus 6 BAC RP23-192D5 (Roswell Park Cance... 42 1.2
11ref|XM_623868.1| PREDICTED: Apis mellifera similar to ENSANGP000... 42 1.2
12gb|AY110979.1| Zea mays CL36581_1 mRNA sequence 42 1.2
13gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, comple... 42 1.2
14gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5... 40 4.8
15gb|AY375291.1| Buchnera aphidicola (Chaitophorus populeti) phosp... 40 4.8
16emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on ch... 40 4.8
17gb|AC090578.6| Homo sapiens chromosome 8, clone RP11-642C5, comp... 40 4.8
18gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, comple... 40 4.8
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
20gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 se... 40 4.8
21dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8 
>ref|XM_467429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3201

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 309  ctaataatcacaactcatcatgagattctggttctgaatcgttagtctttt 359
            |||||||||||||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 2860 ctaataatcacaactcatcatgagcttcaggttctaaatcgtcagtctttt 2810



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 122  atgccctagagaccacaatactgctatacagggatt 157
            ||||| ||||||||| ||||||||||||||| ||||
Sbjct: 3093 atgccatagagaccataatactgctatacagcgatt 3058
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                   
Query: 309      ctaataatcacaactcatcatgagattctggttctgaatcgttagtctttt 359
                |||||||||||||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 29475891 ctaataatcacaactcatcatgagcttcaggttctaaatcgtcagtctttt 29475841



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 122      atgccctagagaccacaatactgctatacagggatt 157
                ||||| ||||||||| ||||||||||||||| ||||
Sbjct: 29476124 atgccatagagaccataatactgctatacagcgatt 29476089
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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1038_A06
          Length = 147836

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                
Query: 309   ctaataatcacaactcatcatgagattctggttctgaatcgttagtctttt 359
             |||||||||||||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 70921 ctaataatcacaactcatcatgagcttcaggttctaaatcgtcagtctttt 70871



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 122   atgccctagagaccacaatactgctatacagggatt 157
             ||||| ||||||||| ||||||||||||||| ||||
Sbjct: 71154 atgccatagagaccataatactgctatacagcgatt 71119
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>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1311_H06
          Length = 139868

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                                 
Query: 309    ctaataatcacaactcatcatgagattctggttctgaatcgttagtctttt 359
              |||||||||||||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 126763 ctaataatcacaactcatcatgagcttcaggttctaaatcgtcagtctttt 126713



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 122    atgccctagagaccacaatactgctatacagggatt 157
              ||||| ||||||||| ||||||||||||||| ||||
Sbjct: 126996 atgccatagagaccataatactgctatacagcgatt 126961
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>dbj|AK100997.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146N12, full
            insert sequence
          Length = 3201

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 309  ctaataatcacaactcatcatgagattctggttctgaatcgttagtctttt 359
            |||||||||||||||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 2860 ctaataatcacaactcatcatgagcttcaggttctaaatcgtcagtctttt 2810



 Score = 48.1 bits (24), Expect = 0.020
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 122  atgccctagagaccacaatactgctatacagggatt 157
            ||||| ||||||||| ||||||||||||||| ||||
Sbjct: 3093 atgccatagagaccataatactgctatacagcgatt 3058
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>gb|AC116605.1| Homo sapiens chromosome 5 clone RP11-443O6, complete sequence
          Length = 164774

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 25    gttatcaaaatataaatgagttt 47
             |||||||||||||||||||||||
Sbjct: 82474 gttatcaaaatataaatgagttt 82496
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>gb|AC106811.2| Homo sapiens chromosome 5 clone RP11-551B15, complete sequence
          Length = 148362

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 25   gttatcaaaatataaatgagttt 47
            |||||||||||||||||||||||
Sbjct: 5607 gttatcaaaatataaatgagttt 5629
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>gb|AY458646.2| Uncultured bacterium 578 clone EBAC080-L31E09 genomic sequence
          Length = 78078

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 265   agtatattgagcagtatctct 285
             |||||||||||||||||||||
Sbjct: 53130 agtatattgagcagtatctct 53110
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>emb|CR388121.11| Zebrafish DNA sequence from clone DKEY-161F5 in linkage group 15,
             complete sequence
          Length = 179357

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 141   actgctatacagggatttata 161
             |||||||||||||||||||||
Sbjct: 87653 actgctatacagggatttata 87633
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>gb|AC153837.4| Mus musculus 6 BAC RP23-192D5 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 232039

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     gtagctgttatcaaaatataa 39
              |||||||||||||||||||||
Sbjct: 212740 gtagctgttatcaaaatataa 212760
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>ref|XM_623868.1| PREDICTED: Apis mellifera similar to ENSANGP00000013944
           (LOC551473), mRNA
          Length = 792

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 15  tatagtagctgttatcaaaat 35
           |||||||||||||||||||||
Sbjct: 400 tatagtagctgttatcaaaat 380
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>gb|AY110979.1| Zea mays CL36581_1 mRNA sequence
          Length = 1101

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 316 tcacaactcatcatgagattctggttctgaatc 348
           ||||||||| ||||||| ||| |||||||||||
Sbjct: 385 tcacaactcgtcatgaggttcaggttctgaatc 417
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>gb|AC132305.3| Mus musculus BAC clone RP24-286A19 from 6, complete sequence
          Length = 187465

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    gtagctgttatcaaaatataa 39
             |||||||||||||||||||||
Sbjct: 37955 gtagctgttatcaaaatataa 37975
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>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence
          Length = 219218

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 236   caaaactgtggtacaaactatctt 259
             |||||||||| |||||||||||||
Sbjct: 48873 caaaactgtgttacaaactatctt 48850
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>gb|AY375291.1| Buchnera aphidicola (Chaitophorus populeti)
            phosphoribosylformimino-5-aminoimidazole carboxamide
            ribotide isomerase (hisA) gene, partial cds; imidazole
            glycerol phosphatase synthase subunit (hisF), histidine
            biosynthesis bifunctional protein (hisIE),
            6-phosphogluconate dehydrogenase (gnd), 2-isopropylmalate
            synthase (leuA), 3-isopropylmalate dehydratase small
            subunit (leuD), 3-isopropylmalate dehydratase large
            subunit (leuC), and 3-isopropylmalate dehydrogenase
            (leuB) genes, complete cds; and deoxycytidine
            triphosphate deaminase (dcd) gene, partial cds
          Length = 8619

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 25   gttatcaaaatataaatgag 44
            ||||||||||||||||||||
Sbjct: 7237 gttatcaaaatataaatgag 7256
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>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a
             novel gene, a non-POU domain containing octamer-binding
             protein (Nono) pseudogene, a Sin3-associated polypeptide
             18 (Sap18) pseudogene, the 5' end of a novel gene and a
             CpG island, complete sequence
          Length = 209175

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    caaaatataaatgagtttca 49
             ||||||||||||||||||||
Sbjct: 61562 caaaatataaatgagtttca 61543
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>gb|AC090578.6| Homo sapiens chromosome 8, clone RP11-642C5, complete sequence
          Length = 187209

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aaaatataaatgagtttcag 50
              ||||||||||||||||||||
Sbjct: 116768 aaaatataaatgagtttcag 116787
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>gb|AC107383.3| Homo sapiens BAC clone RP11-125C20 from 4, complete sequence
          Length = 173808

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   gatttatatcaaattcttct 173
             ||||||||||||||||||||
Sbjct: 58015 gatttatatcaaattcttct 57996
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 317     cacaactcatcatgagattc 336
               ||||||||||||||||||||
Sbjct: 4993072 cacaactcatcatgagattc 4993053
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>gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence
          Length = 88292

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     ggacatgaaatctctatagt 20
             ||||||||||||||||||||
Sbjct: 43672 ggacatgaaatctctatagt 43653
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>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0049I08
          Length = 144379

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   cacaactcatcatgagattc 336
             ||||||||||||||||||||
Sbjct: 34761 cacaactcatcatgagattc 34742


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,082,804
Number of Sequences: 3902068
Number of extensions: 3082804
Number of successful extensions: 53885
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53813
Number of HSP's gapped (non-prelim): 72
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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