ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl15a06 |
|---|---|
| Clone Library Name | barley_pub |
>ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc finger protein)| Length = 2025 Score = 32.3 bits (72), Expect = 0.27 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 Query: 412 WCRICTFNCGSAEDLGLHVHTREHQQ 335 WC+ C CG+ D H+H ++H Q Sbjct: 877 WCKDCNTTCGTMFDFFTHMHNKKHTQ 902
>ZN318_HUMAN (Q5VUA4) Zinc finger protein 318 (Endocrine regulatory protein)| Length = 2099 Score = 31.2 bits (69), Expect = 0.61 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 Query: 412 WCRICTFNCGSAEDLGLHVHTREHQQ 335 WC+ C CG+ D H+H ++H Q Sbjct: 887 WCKDCNTICGTMFDFFTHMHNKKHTQ 912
>PHLC_CLOHA (P59026) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) (Beta toxin) Length = 399 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +3 Query: 81 WRRTGAKQLTELLNLGLHLRGEMQPPYLP*NL 176 W++ +Q T LL GLH G+ PY P N+ Sbjct: 136 WKKGNYEQATWLLGQGLHYFGDFHTPYHPSNV 167
>SRB3_CAEEL (Q95ZY2) Serpentine receptor class beta-3 (Protein srb-3)| Length = 341 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +2 Query: 275 IHFLSLRSIMLHFQNNVHCMLLM-FSCMHM*TQVLC 379 I+F++ + LHF N+ C+L++ F C + + LC Sbjct: 40 IYFITRKIFFLHFHGNLKCLLIVYFICNLLFSMALC 75
>GPR89_MOUSE (Q8BS95) Protein GPR89A| Length = 455 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/59 (30%), Positives = 26/59 (44%) Frame = +1 Query: 172 ISSNAELCNRSSNAYFHRSCPSWLPFCLMTWGL*DSFSVASQHHASFSEQCPLHAVDVL 348 I SN +L ++ + SC WL F W L D F + S H S + + V V+ Sbjct: 98 IVSNIQLLHKQRLLF---SCLLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVI 153
>Y1135_THETN (Q8RAR7) UPF0082 protein TTE1135| Length = 243 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +2 Query: 83 AKDGGKATN*TTELRVALEGGNATTLPTLKSHRMLNYVTGALTPISI-EVALHGY 244 AK+GG ++L++A+E A LP+ R + TG L + EV GY Sbjct: 36 AKEGGGDPETNSKLKLAIERAKAFNLPSENIQRAIKRGTGELGGAKLEEVIYEGY 90
>PHLC_CLOBI (P20419) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) (Cbp) Length = 398 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 81 WRRTGAKQLTELLNLGLHLRGEMQPPY 161 W + K+ T LL GLH G++ PY Sbjct: 135 WEKGNFKEATFLLGQGLHYLGDLNTPY 161
>PANX2_RAT (P60571) Pannexin-2| Length = 664 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +2 Query: 116 TELRVALEGGNATTLPTLKSHRMLNYVTGALTPISIEVAL 235 TELR AL G +A+ P+L H+ L Y A I AL Sbjct: 91 TELRDALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPAL 130
>PANX2_MOUSE (Q6IMP4) Pannexin-2| Length = 607 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +2 Query: 116 TELRVALEGGNATTLPTLKSHRMLNYVTGALTPISIEVAL 235 TELR AL G +A+ P+L H+ L Y A I AL Sbjct: 91 TELRDALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPAL 130
>GPR89_CHICK (Q5F448) Protein GPR89A| Length = 455 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +1 Query: 172 ISSNAELCNRSSNAYFHRSCPSWLPFCLMTWGL*DSFSVASQHHASFSEQCPLHAVDVL 348 + SN L +R + +C WL F W L D F + S H S + + V V+ Sbjct: 98 VVSNIRLLHRQKLLF---ACVLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVI 153
>PANX2_HUMAN (Q96RD6) Pannexin-2| Length = 633 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +2 Query: 116 TELRVALEGGNATTLPTLKSHRMLNYVTGALTPISIEVAL 235 TELR AL G +A+ P+L H+ L Y A I AL Sbjct: 91 TELRDALPGVDASLWPSLFEHKFLPYALLAFAAIMYVPAL 130
>PHLC_CLOSO (Q8VUZ6) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) Length = 399 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +3 Query: 81 WRRTGAKQLTELLNLGLHLRGEMQPPY 161 W++ K+ T LL G+H G++ PY Sbjct: 137 WKKGNYKEATFLLGQGMHYLGDLNTPY 163
>TRPS1_MOUSE (Q925H1) Zinc finger transcription factor Trps1| Length = 1281 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -1 Query: 412 WCRICTFNCGSAEDLGLHVH 353 WC+ C+F+C S+ L L H Sbjct: 435 WCKFCSFSCESSSSLKLLEH 454
>TRPS1_HUMAN (Q9UHF7) Zinc finger transcription factor Trps1 (Zinc finger| protein GC79) (Tricho-rhino-phalangeal syndrome type I protein) Length = 1281 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -1 Query: 412 WCRICTFNCGSAEDLGLHVH 353 WC+ C+F+C S+ L L H Sbjct: 435 WCKFCSFSCESSSSLKLLEH 454
>COXN_BRAJA (P98000) Alternative cytochrome c oxidase subunit 1 (EC 1.9.3.1)| (Alternative cytochrome c oxidase polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3) subunit 1) Length = 591 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = -2 Query: 171 FKVGRVVAFPPSSATLSSVVQLVALPPSFARLLLV 67 F++G PPS+ +L++ + +VAL FA+++ + Sbjct: 480 FELGDAAFIPPSAHSLNAFITVVALTVGFAQMVFL 514
>GPR89_HUMAN (Q9Y302) Protein GPR89A (Putative MAPK-activating protein PM01)| (Putative NF-kappa-B-activating protein 90) Length = 455 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = +1 Query: 172 ISSNAELCNRSSNAYFHRSCPSWLPFCLMTWGL*DSFSVASQHHASFSEQCPLHAVDVL 348 I SN L ++ + SC WL F W L D F + S H S + + V V+ Sbjct: 98 IVSNIRLLHKQRLLF---SCLLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVI 153
>GPR89_BOVIN (Q5BIM9) Protein GPR89A| Length = 423 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/59 (30%), Positives = 25/59 (42%) Frame = +1 Query: 172 ISSNAELCNRSSNAYFHRSCPSWLPFCLMTWGL*DSFSVASQHHASFSEQCPLHAVDVL 348 I SN L ++ + SC WL F W L D F + S H S + + V V+ Sbjct: 98 IVSNIRLLHKQRLLF---SCLLWLTFMYFFWKLGDPFPILSPKHGILSIEQLISRVGVI 153
>KHSE_BACHD (Q9K7E4) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 309 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = -1 Query: 370 LGLHVHTREHQQHA----MDIVLKMKHDAAKRQKMNPTGPKSLNKKVAMKGNFYGN 215 +G H+ T H H +D+VL + + +K P+SL+ K A++G+ N Sbjct: 144 IGTHLSTETHVIHGGVPDLDLVLLVPKEELLTKKARGILPESLSYKEAVRGSSVSN 199
>HBL1_CAEEL (Q9XYD3) Hunchback-like protein| Length = 982 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = -1 Query: 409 CRICTFNCGSAEDLGLHV--HTREHQQHAMDIVLKMKHDAAKRQKMNPTGPKSLNKKVAM 236 C+ C +NC + L H+ HT +Q MD K+ + + + + + + + M Sbjct: 597 CKKCAYNCVNKSMLNSHMKSHTNHYQFRCMDCTYATKYCHSLKLHLKKYNHRRVPEGIEM 656 Query: 235 KG 230 G Sbjct: 657 SG 658
>PHLC1_CLOPE (P15310) Phospholipase C precursor (EC 3.1.4.3) (PLC)| (Phosphatidylcholine cholinephosphohydrolase) (Alpha-toxin) (Hemolysin) (Lecithinase) Length = 398 Score = 27.3 bits (59), Expect = 8.8 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 81 WRRTGAKQLTELLNLGLHLRGEMQPPYLP*NL 176 W+R KQ T L +H G++ PY P N+ Sbjct: 137 WQRGNYKQATFYLGEAMHYFGDIDTPYHPANV 168
>TAT_HV1SC (P05906) TAT protein (Transactivating regulatory protein)| Length = 101 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Frame = -1 Query: 412 WCRICTFNCG---SAEDLGLHVHTREHQQH------AMDIVLKMKHDAAKRQKMNPTGPK 260 +C+ C F+C + + LG+ ++ +Q + + + A + + +PTGPK Sbjct: 26 YCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRAPQDSQTHQVSLPKQPASQARGDPTGPK 85 Query: 259 SLNKKV 242 KKV Sbjct: 86 ESKKKV 91
>ERCC3_DROME (Q02870) DNA excision repair protein haywire (EC 3.6.1.-)| (ATP-dependent DNA helicase hay) (ERCC-3 homolog protein) Length = 798 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = -1 Query: 325 DIVLKMKHDAAKRQKMNPTGPKSLNKKVAMKGNFYGNRR*SSCYI 191 D V +KH A K K GP S N+++ + NF N + ++ ++ Sbjct: 579 DNVFALKHYAIKMNKPFIYGPTSQNERIQILQNFKFNSKVNTIFV 623
>BIOF_METJA (Q58694) 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS)| (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase) Length = 372 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +1 Query: 298 HHASFSEQCPLHAVDVLLYAHVD 366 +HAS + C L DVL+Y H D Sbjct: 118 NHASIIDGCKLSKADVLIYNHCD 140 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,708,302 Number of Sequences: 219361 Number of extensions: 1080175 Number of successful extensions: 2812 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2812 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
